Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_021862.1 Length=8576 Score E Sequences producing significant alignments: (Bits) Value seq367 152 3e-33 seq4821 118 6e-23 >seq367 Length=21361 Score = 152 bits (168), Expect = 3e-33 Identities = 204/279 (73%), Gaps = 5/279 (2%) Strand=Plus/Minus Query 6808 CTCTTCGCGCTTGTCGATGCCCTGATAGCCGGCATCGCCGAACACGTCGGCCTCCTTGCC 6867 ||| || || || || | || ||||| || ||||| || ||||| |||| || | || Sbjct 13096 CTCCTCCCGTTTTTCAACACCTTGATAACCCGCATCACCAAACACATCGGTTTCATCACC 13037 Query 6868 ATGCACCAATGCGTTGCGCTGGCGTCACGTCGTTGACGTTGGCGGCCGTGCCCACTACGG 6927 ||||| || ||| ||| || | || || |||| || || || || || || | | || Sbjct 13036 ATGCAGCAGTGC-TTGTGCCTGAGTAACATCGTGAACATTCGCTGCTGTTCCGATCAGGG 12978 Query 6928 TGTGCACCAGCCCCGAGTCCGCATCCACACCAATGTGCGCTTTCATGCCGAAATGCCACT 6987 |||| || ||||| || | |||||| ||||| |||||| | ||||||||||| ||||||| Sbjct 12977 TGTGGACAAGCCCGGATTGCGCATCAACACCGATGTGCACCTTCATGCCGAAGTGCCACT 12918 Query 6988 GGTTACCTTTCTTGGTCTGGTGCATCTCTGGGTCACGCTTGC-CGCTGC-CATTCTTGGT 7045 | || |||||| |||| || ||||| || ||| ||| || || | | |||||||| Sbjct 12917 GCTTGCCTTTCCTGGTTTGATGCATTTC--GGTATCGCGCGCTCGTTCCTTGTTCTTGGT 12860 Query 7046 CGAACTGGGCGCGGCAATCAGCGAGGCGTCGACCACCGT 7084 |||| ||||| |||||||||| ||| || || | ||| Sbjct 12859 CGAAGGAGGCGCTGCAATCAGCGTGGCATCAACAATCGT 12821 >seq4821 Length=3878 Score = 118 bits (130), Expect = 6e-23 Identities = 258/382 (68%), Gaps = 7/382 (2%) Strand=Plus/Minus Query 6568 ATTGCTCAGGGCAAACAGCGTGTGTAATTGCTGTGTGTTCTTTATCAAGCCTCGATAGCG 6627 |||| ||| |||||||| || | | ||||| |||||| || ||| | || || Sbjct 3876 ATTGGACAGCGCAAACAGTGTCTTGATCTGCTGGCCGTTCTTGGCCAGGCCCAGGTAACG 3817 Query 6628 CACCCTCAAGTGCCCAAACTGGCGCTTGATGACTCGGAACGGATGTTCCACGCGGGCACG 6687 |||| | | | || ||||| |||||||| || || ||||| || || || ||| || Sbjct 3816 CACCTTGACGAAACCGAACTGACGCTTGATCACCCGAAACGGGTGCTCGACCTTGGCGCG 3757 Query 6688 AATGCGCGCCTTGACCCGCTCCAGCTCATCGACGAGCGCACCCGACACGGTGCTCT---T 6744 ||| | |||||||||| ||| || |||| | ||| | | | || || | | | Sbjct 3756 AATACTCGCCTTGACCTTCTCAGCCTTGTCGATCAAGGCATCTGTCGCGCTGTTTTCTTT 3697 Query 6745 GTCCAAGGCGCGGCGTTTGCCCGGGCGTAATGCCACATGCCAACGCACCTTCAACTCCTG 6804 ||||| ||||||||| ||||| | || || ||||| || | | ||| || Sbjct 3696 GTCCAGCTTCTTGCGTTTGCCAGGGCGCATGGCAACGTGCCACTGCCCACTG--CTCTTG 3639 Query 6805 CACCTCTTCGCGCTTGTCGATGCCCTGATAGCCGGCATCGCCGAACACGTCGGCCTCCTT 6864 | || | |||||||| | |||||| ||||| ||||| ||||||||| | ||| | Sbjct 3638 G-CATCAGCTCGCTTGTCCACGCCCTGGTAGCCCGCATCAGCGAACACGTGTGTCTCTTG 3580 Query 6865 GCCATGCACCAATGCGTTGCGCTGGCGTCACGTCGTTGACGTTGGCGGCCGTGCCCACTA 6924 || |||| ||| ||||| || | || |||||| |||||| | | |||| | Sbjct 3579 TCCGTGCAGCAAGCTGTTGCCCTCG-GTGACGTCGGCCACGTTGCCCGAGGTGCATCGCA 3521 Query 6925 CGGTGTGCACCAGCCCCGAGTC 6946 | ||||||||||| |||||||| Sbjct 3520 CCGTGTGCACCAGGCCCGAGTC 3499 Score = 91.5 bits (100), Expect = 8e-15 Identities = 252/376 (67%), Gaps = 13/376 (3%) Strand=Plus/Minus Query 7125 GTTGACGGTCTGCAGAAATTGCTCGGCTAACTGGTGTCGCTCCAGCAAGTGCCGAAAGCG 7184 |||||| || ||||| || ||||| | | |||| || || ||| |||||||| Sbjct 3321 GTTGACCGTGGCCAGAATCTGGTCGGCCAGTTTGTGTTTTTCTAGGCGGTGACGAAAGCG 3262 Query 7185 CAGAATGCTGACCCGGTCCGGCAGTCGGCTTA-TGCCTCCCAGCCCCGCGAATTGCCGAT 7243 ||| ||| || ||| |||||||||| | |||||| || || || | || | Sbjct 3261 CAGGATGGTGCTTTCGTCAGGCAGTCGGCCAAATGCCTCG-AGTTGGGCAAACTCACGGT 3203 Query 7244 ACAACGGCACGTCGTACAGCGCCTCTTCCATCGCCACGTCCGTCAGCCCGAACCATTGCT 7303 ||| ||| || | | ||||||||||| ||| ||||| ||| ||||||||||| Sbjct 3202 ACAGCGGTGTATCAAAGAAGGCCTCTTCCATGGCCGGGTCCGACAGGTTGAACCATTGCT 3143 Query 7304 GCAGAAAGTGGATGCGCAGCATCGTTTCGACTGGAAACGGCTTCCGACCCG--TCGCCTT 7361 ||| ||||| | |||||||| || || | | ||||||| || |||| ||||| | Sbjct 3142 GCATGAAGTGCACCCGCAGCATGGTCTCCAGAGCAAACGGCGGTCG-CCCGTTTCGCCCT 3084 Query 7362 GACCGGCGCATGCGGCGCTATCA--ACGCCAAAAAACGCCTGCCACGGCACCA-CACGTT 7418 | | | | ||||| || | || | | ||| ||| || || | |||| | Sbjct 3083 TCGCTGTAAAAG-GGCGCAATGAGTTCGACCAGTTGCGC---CCAGGGAACGACCACG-T 3029 Query 7419 CCATCTCATCCAGAAATACCTGCTTGCGCGTGCGTCGGTTGCTCAGGTCCAGGCCAAGGT 7478 |||||| | || || ||||||||||| || || |||||||| ||| ||| | Sbjct 3028 CCATCTGTTGCAAGAACACCTGCTTGCGGGTCTTGCGCGTGCTCAGGCTCAGATCAAAGC 2969 Query 7479 CGCTTTGTTTCATGGG 7494 ||||||||||||||| Sbjct 2968 TGCTTTGTTTCATGGG 2953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 27325221972160