Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephydra_20gracilis_20[genbank_20GCA_5F001014675.1_202015-05-28] 61,434 sequences; 410,872,512 total letters Query= NC_001741.1 Length=4877 Score E Sequences producing significant alignments: (Bits) Value seq10870 105 2e-19 seq42511 100 9e-18 seq47410 91.5 5e-15 seq39822 82.4 2e-12 >seq10870 Length=2260 Score = 105 bits (116), Expect = 2e-19 Identities = 192/284 (68%), Gaps = 24/284 (8%) Strand=Plus/Minus Query 867 TTTACGAAGTCTTTTGTTGAGCATGGTTTTGTTATAGGTCTTCTTTCAGCTACAGCGGAT 926 ||||| |||||||| ||||||||| | | || |||||| || | | || || Sbjct 1199 TTTACTAAGTCTTTCACCGAGCATGGTCATATCATTGGTCTTGCTTGTGTTCGGGCAGAC 1140 Query 927 TTAACTTATCAGCAAGGTTTAGAGCGTCAGTGGTCAAGATTTAGTCGTTATGATTATTAT 986 | ||||||||||||||||| | ||| |||||| | ||||||||||| || Sbjct 1139 CTGACTTATCAGCAAGGTTTGAACCGTATGTGGTCCCGCCAGGATCGTTATGATTTCTAC 1080 Query 987 TGGCCTACTTTTGCTCATTTGGGAGAGCAGCCTGTTTATAATAAAGAGATTTATTGCCAA 1046 ||||| || |||||||| |||| |||||| | || | ||||| ||||||||| || Sbjct 1079 TGGCCCGCTCTTGCTCATCTGGGTGAGCAGGCGGTATTGAATAAGGAGATTTATGCGCA- 1021 Query 1047 TCAGATACTGTTATGGATCCTAGTGGTTCTGCGGTTAATGATGTGCCTTTTGGTTATCAA 1106 || ||| ||| | | | |||| ||| || ||||||||| Sbjct 1020 --AGGTAC------------------GTCTACCGATGATGAAGTG---TTCGGTTATCAA 984 Query 1107 GAGCGTTATGCTGAGTATCGTTATAAGCCTTCGAAGGTTACTGG 1150 ||||| || ||||| || ||||||||||||||| || | || || Sbjct 983 GAGCGGTACGCTGAATACCGTTATAAGCCTTCGCAGATCACGGG 940 Score = 80.6 bits (88), Expect = 8e-12 Identities = 150/217 (69%), Gaps = 14/217 (6%) Strand=Plus/Minus Query 4541 TTTGATCGGTCTCACGGTTATAAGACTACGTTTGATATGGATTATTTAGTTCCATTTTTT 4600 |||||||| || || ||| || ||||||||||| | | | | |||| ||||| Sbjct 2204 TTTGATCGTTCCCATGGTCTAAAAACTACGTTTGACGCTGGTAAGCTGATTCCTATTTTT 2145 Query 4601 GTTGATGAAGTTCTTCCTGGAGATAC-TTTTTCTT---TATCGGAGACGCATCTTTGTCG 4656 || ||||| || |||||||| ||||| ||| ||| ||| ||| | || | || Sbjct 2144 GTGGATGAGGTGCTTCCTGGTGATACGTTTAACTTGAATAT----GACCGGTTTTGGCCG 2089 Query 4657 TTTGACTACGTTAGTTCAACCGATTATGGATAATATTCAGTTAACTACTCAGTTTTTCTT 4716 ||| ||||| |||| || | ||||||||||| || || ||||||||| Sbjct 2088 GTTGGCTACGCCTCTTCATCCTGTGATGGATAATATGTTCTTGGAGAC---GTTTTTCTT 2032 Query 4717 T---GTTCCCAATCGTTTGCTTTGGGATAATTGGGAA 4750 | ||||| ||||| ||| | ||||||||||||||| Sbjct 2031 TTTCGTTCCAAATCGATTGGTCTGGGATAATTGGGAA 1995 >seq42511 Length=5077 Score = 100 bits (110), Expect = 9e-18 Identities = 157/220 (71%), Gaps = 6/220 (3%) Strand=Plus/Minus Query 4541 TTTGATCGGTCTCACGGTTATAAGACTACGTTTGATA-TGGATTATTTAGTTCCATTTTT 4599 |||||||| |||||||||| || ||||| ||||| |||| || | | | |||||| Sbjct 822 TTTGATCGTTCTCACGGTTTGAAAACTACATTTGACGCTGGACAGTTGATTCCTATTTTT 763 Query 4600 TGTTGATGAAGTTCTTCCTGGAGATACTTTT--TCTTTATCGGAGACGCATCTTTGTCGT 4657 ||| ||||| |||||||| || ||||| ||| |||| || || || | || | ||| Sbjct 762 TGT-GATGAGGTTCTTCCAGGCGATACCTTTAATCTTAATATGA--CGGGTTTTGGGCGT 706 Query 4658 TTGACTACGTTAGTTCAACCGATTATGGATAATATTCAGTTAACTACTCAGTTTTTCTTT 4717 | ||||| |||| ||||| ||||||||||| | | || || || ||| Sbjct 705 CTTGCTACGCCTCTTCACCCGATCATGGATAATATGTATCTTGAGACCTTTTTCTTTTTT 646 Query 4718 GTTCCCAATCGTTTGCTTTGGGATAATTGGGAATCGTTTA 4757 ||||| |||||| | ||||||| || |||||| ||||| Sbjct 645 GTTCCAAATCGTCTAGTTTGGGACAACTGGGAAAAGTTTA 606 >seq47410 Length=4736 Score = 91.5 bits (100), Expect = 5e-15 Identities = 143/202 (71%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 1094 TTTTGGTTATCAAGAGCGTTATGCTGAGTATCGTTATAAGCCTTCGAAGGTTACTGGATT 1153 |||||| |||||||| | | || || ||||||||||| ||||| | ||| | || || Sbjct 4536 TTTTGGATATCAAGAAAGATGGGCAGAATATCGTTATAAACCTTCTACGGTAAAAGGTTT 4595 Query 1154 ATTTAGATCTAACGCTACAGGTACTCTAGATTCTTGGCATTTGTCTCAGAATTTTGCGAA 1213 ||| | ||| | || || | | ||||| | |||||| | ||||| ||||||| || Sbjct 4596 ATTCCGTTCTGAAGCCTCAAATTCCTTAGATGCATGGCATCTCTCTCAAGATTTTGCAAA 4655 Query 1214 TTTACCTACTTTGAATG-AGACTTTTATTCAGAGTAATACGCCGATAGATAGAGCGTTAG 1272 | |||| |||| |||| ||| |||||| | | |||| || || || |||| ||| Sbjct 4656 TCTACCAGCTTTAAATGCAGA-TTTTATCGAATCTGATACACCAATGGACAGAGTTGTAG 4714 Query 1273 CAGTTCCTGATCAGCCTGATTT 1294 ||||| | || | || ||||| Sbjct 4715 CAGTTACAGACGAACCCGATTT 4736 >seq39822 Length=5133 Score = 82.4 bits (90), Expect = 2e-12 Identities = 75/92 (82%), Gaps = 2/92 (2%) Strand=Plus/Plus Query 4540 TTTTGATCGGTCTCACGGTTATAAGACTACGTTTGA-TATGGATTATTTAGTTCCATTTT 4598 ||||||||||||||| || | ||| || |||||||| | |||| ||| | || || ||| Sbjct 1972 TTTTGATCGGTCTCATGGATTTAAAACAACGTTTGATTCTGGA-TATCTTGTGCCTGTTT 2030 Query 4599 TTGTTGATGAAGTTCTTCCTGGAGATACTTTT 4630 |||||||||||||| | || || ||||||||| Sbjct 2031 TTGTTGATGAAGTTTTGCCCGGGGATACTTTT 2062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15483988780020