Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephydra_20gracilis_20[genbank_20GCA_5F001014675.1_202015-05-28] 61,434 sequences; 410,872,512 total letters Query= NC_002643.1 Length=4594 Score E Sequences producing significant alignments: (Bits) Value seq3780 109 2e-20 >seq3780 Length=5211 Score = 109 bits (120), Expect = 2e-20 Identities = 131/178 (74%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 857 TAAGACAAGCAATGATGATGCAATCTCTGCTTGAACTCGACGCACGCGGTGGAACACGCT 916 ||||| | || |||||| | ||||| || || ||||| ||||| | || || ||| | | Sbjct 2260 TAAGAGATGCCATGATGGTACAATCGCTACTAGAACTAGACGCTAGAGGCGGTACAAGAT 2201 Query 917 ATGTTGAAATTCTTAAATCTCACTTCAACGTCATTAGTCTTGACTTCCGCCTACAACGTC 976 ||||||||||| ||||| | || || ||||| | || ||||||| | |||||||| | Sbjct 2200 ATGTTGAAATTATTAAAGCGCATTTTAACGTTGTCTCTCCTGACTTCAGACTACAACGAC 2141 Query 977 CAGAATATCTATCTGGCGGAACTATTGATCTCCAACAGAATCCAGTTCCACAAACGTC 1034 |||||| || || |||||| ||| || ||| ||||||| |||||||| || Sbjct 2140 CAGAATTCCTCTCAGGCGGATCTACCACCATCGTACAACATCCAGTCCCACAAACTTC 2083 Score = 96.9 bits (106), Expect = 1e-16 Identities = 198/294 (67%), Gaps = 3/294 (1%) Strand=Plus/Minus Query 193 GCGACTCAAGTAGTCCCTGTTATGGACAGAATGATGCTCGACTTCTATTTCTTCTTCGTC 252 || || ||||| || ||||||||||||| ||| | || | | |||||||| || Sbjct 2973 GCTACACAAGTTGTTCCTGTTATGGACAATATGTATTTAGATTATTTTTTCTTCTATGTA 2914 Query 253 CCTTGCCGACTAGTATGGGACAACTGGGAAAAATTCAACGGAGCACAAGACAACCCATCG 312 || || || ||||| |||| ||||| || || || ||||||||||| || | Sbjct 2913 CCAGCTAGAATATTATGGAACAATTGGGAGCGCTTTAATGGTGCACAAGACAATCCCACA 2854 Query 313 GACTCAACGGACTATTTGATCCCAACAATCACAGCACCCGCTGGT---GGCTTCGAAAAC 369 || ||||| |||||| || ||||||||||| | || |||| || || || Sbjct 2853 GATTCAACAGACTATACAATTCCAACAATCACTATAGACGATGGTTCAGGTTTTCAAGTA 2794 Query 370 ATGTCCATCTACGATCACTTCGGAATTCCGACACAAGTTGCAAATCTCGAGATAAATGCT 429 | || | |||| | || ||| | || ||| |||| | ||| | || || || Sbjct 2793 GGAACTATTTTCGATAAATTTGGATTACCTACAGAAGTAGATAATATTACTATCAACGCA 2734 Query 430 CTACCTTTCAGAGCTTACAATCTTATCTATAACGACTGGTTCCGAGACCAAAAT 483 |||| || |||||||| || ||||| | || || |||||||| || |||||| Sbjct 2733 TTACCATTTAGAGCTTATAACCTTATTTGGAATGAATGGTTCCGTGATCAAAAT 2680 Score = 82.4 bits (90), Expect = 2e-12 Identities = 164/236 (69%), Gaps = 9/236 (4%) Strand=Plus/Minus Query 3019 AAAGGAGACACAAATGCAACTAAAAGTATTCTCTATCAGAGACTCAAAAACTGGAGTATA 3078 |||||||| || ||| |||||| |||| ||||||||| |||| | | ||| | Sbjct 4962 AAAGGAGAT-CACATGATCTTAAAAGCATTCAGCATCAGAGACCAAAAATCAGAAGTGTT 4904 Query 3079 TGGGACACCGTTCTATCAACACACTCACGGTCAAGCTGAAAGATCCTTTCAG--CAACTA 3136 | || || |||| ||| | || || || |||| || |||||||| ||| || | | Sbjct 4903 TAACACTCCCTTCTTTCAGAAAACACATGGAGAAGCAGAGAGATCCTT-CAGATCAGC-A 4846 Query 3137 GCAAAAGACCCACAA--TCAACAGTGGCAAACCACCCCGAAGACTTCGATCTATTCCACC 3194 | |||||| | || ||||| || ||| |||| ||||||||||| || | | | | Sbjct 4845 GTTAAAGACGAAAAAACTCAACTGTATCAAT--ACCCAGAAGACTTCGACCTCTACTATC 4788 Query 3195 TTGGGGAATACGACGACCAAACCGGGAAACTGACCCCACTGGACACACCGGAACAT 3250 |||| |||||||| ||| | || || || | ||| || |||||||| ||||| Sbjct 4787 TTGGTGAATACGATGACAACACTGGTCAAATTACCAGTCTCGACACACCACAACAT 4732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14578997283790