Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephydra_20gracilis_20[genbank_20GCA_5F001014675.1_202015-05-28] 61,434 sequences; 410,872,512 total letters Query= NC_005131.2 Length=7118 Score E Sequences producing significant alignments: (Bits) Value seq61429 174 7e-40 >seq61429 Length=6533 Score = 174 bits (192), Expect = 7e-40 Identities = 337/498 (68%), Gaps = 9/498 (2%) Strand=Plus/Minus Query 1 GAATTCGGCGGGGTCGATCCAGCGTCGTGAGCGGTCTTTCATGGGCAATAAAAAA-CCAC 59 |||||| | |||| | ||| | |||||| |||| | ||| |||||||||||| |||| Sbjct 1794 GAATTCTTCTGGGTTGGCCCATCTACGTGAGGGGTCGTGCATAGGCAATAAAAAAGCCAC 1735 Query 60 CAGTTTTTACGCTGGTGGTTGTCTTTGTAGACCCCTCGGCTCG--GTGGTCTTGCTCGGT 117 |||| | |||||||| | || ||| ||| | || ||| ||| ||| | Sbjct 1734 CAGTGTCAGTGCTGGTGGCTAGTGTTACAGAGCCCGCTTTACGATGTGATCTAT-TCGAT 1676 Query 118 TCAGGTTTCGCATAATTTGCATTATGAAAACCTGAACCTTCAGCTCATCGAATCACGCGT 177 | | || ||||||| |||||||||| |||| ||| ||||||||||||||||| Sbjct 1675 TTAAATT-CGCATAACAACTGTTATGAAAACTTGAATCTTTAGCTCATCGAATCACGCTG 1617 Query 178 AGCGCAAGGCCCCGCGCGGGTTCAGCCATTCGATGAGCGGCTTAAAAGATNNNNNNNNNN 237 | || || ||| |||||| |||||||||| ||||||||||||||||||| Sbjct 1616 GGAGCCAGTCCCGGCGCGGATTCAGCCATTTGATGAGCGGCTTAAAAGATTTGGAAATTT 1557 Query 238 NNNNNNNNNNNNNTTCTTTTCTGGCGCGTGCTTCGTTCGCCAAAATTTTAAAAGCTTCTG 297 |||||||| | |||| |||| | || ||||||| ||||||||| | Sbjct 1556 TTTCCCTTTTTTGTTCTTTTCGTGTGCGTTCTTCTTCAGCGAAAATTTCAAAAGCTTCCG 1497 Query 298 AGTCGTCAATTCCTGCTTCATGCGCAAGGATTAGCGCATCGTCATAATCCGGAAGGCGCT 357 ||| ||||| ||||| | || || ||||| |||||| |||| ||| |||| || Sbjct 1496 CCGCGTTTATTCCAGCTTCTTTTGCGAGAATTAGGGCATCGCAGTAATTCGGCAGGCTCT 1437 Query 358 --CTGCCTTTGAATATCGGTCTAGGCTGCGTTGGTGGATTCCCAGTTCTTTCGCAGCTCT 415 || |||| ||||| | || || | | ||| | ||||||||||||| | Sbjct 1436 TGTTGTTTTTG--TATCGATTTAAATAAACCTGCCGCAGTCCTATTTCTTTCGCAGCTTT 1379 Query 416 GTGTACCGATCGCCCGTGTAGGGCTTTAGCTATCAGTTCTTGGTAGCTCATAAAAATTTC 475 | || || || | ||| || || |||||||||| | |||| ||||||||| || Sbjct 1378 ATTGACGCTACGGCCATTTAGCGCCTTCTCTATCAGTTCCTTGTAGGTCATAAAAAACTC 1319 Query 476 CAATTTCCAAGTTGAGAC 493 | ||| || | | |||| Sbjct 1318 CTATTGTCATGCTTAGAC 1301 Score = 145 bits (160), Expect = 3e-31 Identities = 155/205 (76%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 6914 TGAGGTCTAGCTGCAGCTGCTGTCGCTTGTGGAGTGGGTACAGCGTGCGTCGGTACGCCT 6973 |||| | || || |||||| | |||||||| |||||||| || || | | | |||| Sbjct 1999 TGAGCTGGAGTTGGAGCTGCCGCTTCTTGTGGATCGGGTACAGGGTTCGCCTGAAGGCCT 1940 Query 6974 CGGCCTTGATCTCGTCAAGTTGCAGAACTGCAACGCTCCATGCAGGAATTGGTCGTGCGC 7033 ||| | | ||||| ||| | | |||||||||| ||||||| || || || ||||||| Sbjct 1939 CGGTTTCCAGCTCGTGGAGTCGTAAAACTGCAACGGTCCATGCGGGTATCGGGCGTGCGC 1880 Query 7034 CTCGCTGCCAATCTCGGATGGTTCGTGGTGTTCGCCGAAGCTTCGTGGATAGGATTTTGA 7093 |||| |||| || ||||| ||||| ||||| ||| | ||||| |||| || |||| | Sbjct 1879 CTCGGAGCCAGTCGCGGATCGTTCGGGGTGTCCGCTGCAGCTTTTTGGACAGTGTTTTTA 1820 Query 7094 TGGTGTAGACCTTCGCCCAATAGTC 7118 |||||||||||| |||||||| || Sbjct 1819 CGGTGTAGACCTTGGCCCAATATTC 1795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 22646737278832