Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephydra_20gracilis_20[genbank_20GCA_5F001014675.1_202015-05-28] 61,434 sequences; 410,872,512 total letters Query= NC_022790.1 Length=4129 Score E Sequences producing significant alignments: (Bits) Value seq61318 113 1e-21 seq14808 95.1 3e-16 seq31519 89.7 1e-14 seq30888 89.7 1e-14 seq23138 77.0 8e-11 >seq61318 Length=2697 Score = 113 bits (124), Expect = 1e-21 Identities = 214/313 (68%), Gaps = 4/313 (1%) Strand=Plus/Minus Query 1066 ACTGATGCAACAACACCGCAAGGTAACTTATCGGCCATAGGTACAACGGTACTT--AGTG 1123 |||||||| ||||| || |||||||| || | || || ||||| ||| ||| |||| Sbjct 2263 ACTGATGCTACAACTCCTCAAGGTAATTTGGCTGCTATTGGTACT--GGTTCTTTTAGTG 2206 Query 1124 GCCACTCTTTTACAAAGAGTTTCACTGAACATACAATAGTAATAGGTATGGTATCTGTAA 1183 | || |||||| || |||||| || || || | || || | || ||||| | Sbjct 2205 GTCATGGTTTTACTAAATCTTTCACCGAGCACTGTATCATCATTGGCCTTGTTTCTGTTA 2146 Query 1184 GAACAGATTTAACATACCAACAAGGACTGAACAGAATGTTTAGTAGAGAAACAATATACG 1243 | |||| | || || |||||||| |||| ||||||| || ||| || | || | Sbjct 2145 GGGCAGACCTGACCTATCAACAAGGGTTGAATAGAATGTGGAGCAGACAAGGACGTTATG 2086 Query 1244 ATTACTACTGGCCAACCCTTTCAACGATTGGCGAACAAGCAGTCAAAAACAAAGAAATAT 1303 ||| ||||||||| | ||| | |||| || || || || || || ||||| | Sbjct 2085 ATTTTTACTGGCCAGCGCTTGCCCATCTTGGTGAGCAGGCCGTACTTAATAAGGAAATTT 2026 Query 1304 ACGCACAAGGAAGTGCAGCCGACGAAACTACGTTCGGCTATCAAGAGCGTTATGCGGAAT 1363 |||| ||||| | | || || || | ||| || ||||| || || |||||||||| Sbjct 2025 ACGCTCAAGGTAATAGTGCTGATGAGGATGTGTTTGGTTATCAGGAACGGTATGCGGAAT 1966 Query 1364 ATAGATACAAGCC 1376 |||| || ||||| Sbjct 1965 ATAGGTATAAGCC 1953 >seq14808 Length=1530 Score = 95.1 bits (104), Expect = 3e-16 Identities = 317/486 (65%), Gaps = 18/486 (4%) Strand=Plus/Plus Query 933 CGGTTCAAGATATATCGAAGTAATAAAAAATCATTTTAACGTAACTAGCCCAGATGCTAG 992 |||| || | ||||||||| | || ||| ||||| |||||| || ||||| | Sbjct 1037 CGGTACACGGTATATCGAAATCATCAAAGCCCATTTCGGCGTAACGTCACCTGATGCCCG 1096 Query 993 ATTACAACGACCAGAATATCTTGGTGGCGGAAGCTCACCGGTAAATATCAGTCCGGTCGC 1052 | | ||||| || ||||| ||||| ||||| || | | ||||| || || || | Sbjct 1097 ACTTCAACGCCCTGAATACCTTGGCGGCGGTTCTTCCCGTATCAATATTAGCCCTGTTCC 1156 Query 1053 ACAAACATCGTCAACTGATGCAACAACACCGCAAGGTAA-CTTATCGGCCATAGGTACAA 1111 |||||| ||||| |||| |||| || ||||||||||| ||| ||| | | ||||| Sbjct 1157 ACAAACGTCGTCTTCTGACACAACCACTCCGCAAGGTAATCTTGCCGG-CTTCGGTACGG 1215 Query 1112 CGGTACTTAGTGGCCACTCTTTTACAAAGAGTTTCACTGAACA----TACAATAGTAATA 1167 | | | | ||| || ||||| ||||||||| || ||| | || Sbjct 1216 TCGGATTCGACCGGCACGGGTTCACAAAATCTTTCACTGAGCACGGTCACA----TTATC 1271 Query 1168 GGTATGGTATCTGTAAGAACAGATTTAACATACCAACAAGGACTGAACAGAATGTTTAGT 1227 || | | | || | | ||| | || || |||||||| || ||| | |||| | Sbjct 1272 GGCCTTGCCTGCGTTCGGGCCGATCTCACGTATCAACAAGGCCTCAACCGTATGTGGTCT 1331 Query 1228 AG--AGAAACAATATACGATTACTACTGGCCAACCCTTTCAACGATTGGCGAACAAGCAG 1285 | || | | ||||| | ||||||||| | ||| | | |||||||| | | Sbjct 1332 CGCCAGGACC--GGTACGACTTCTACTGGCCTGCGCTTGCCCACCTGGGCGAACAGCCCG 1389 Query 1286 TCAAAAACAAAGAAATATACGCACAAGGAAGTGCAGCCGACGA--AACTACGTTCGGCTA 1343 | ||||| ||||| || || ||||| | || ||||| || || | ||||||||| Sbjct 1390 TTCTCAACAAGGAAATCTATGCTCAAGGCACAGCCGCCGATGAGGAAGT--GTTCGGCTA 1447 Query 1344 TCAAGAGCGTTATGCGGAATATAGATACAAGCCAAGTTCTGTAACTGGCAAATTCCGTTC 1403 || |||||||| |||||||| | || || || | |||| || ||||||||| Sbjct 1448 CCAGGAGCGTTACGCGGAATACCGGTATAAACCGTCTCAAATAACAGGTGCATTCCGTTC 1507 Query 1404 AAACGC 1409 ||| || Sbjct 1508 AAATGC 1513 >seq31519 Length=4884 Score = 89.7 bits (98), Expect = 1e-14 Identities = 183/270 (68%), Gaps = 4/270 (1%) Strand=Plus/Minus Query 1051 GCACAAACATCGTCAACTGATGCAACAACACCGCAAGGTAACTTATCGGCCATAGGTACA 1110 || |||||||| || || ||| | ||||| || ||||||||| || | || || ||||| Sbjct 2424 GCTCAAACATCATCCACCGATTCTACAACCCCACAAGGTAACCTAGCTGCTATGGGTAC- 2366 Query 1111 ACGGTACT--TAGTGGCCACTCTTTTACAAAGAGTTTCACTGAACATACAATAGTAATAG 1168 || |||| | ||| || || ||||| || || || ||| | | | | Sbjct 2365 -CGTTACTGTTTCTGGACATGGATTCACAAAATCCTTTACGGAGCATTGTGTTATCCTGG 2307 Query 1169 GTATGGTATCTGTAAGAACAGATTTAACATACCAACAAGGACTGAACAGAATGTTTAGTA 1228 | |||||| ||| | |||| | || ||||||||||| | |||||||||||||| Sbjct 2306 GAATGGTAAATGTTCGTGCAGACATTACCTACCAACAAGGCTTAAACAGAATGTTTAGCC 2247 Query 1229 GAGAAACAATATACGATTACTACTGGCCAACCCTTTCAACGATTGGCGAACAAGCAGTCA 1288 | ||| | | || || || ||||| | ||| | | || || |||||| || Sbjct 2246 GGCGAACTAGGTGGGACTATTATTGGCCTTCTCTTGCCCACCTAGGTGAGCAAGCAATCC 2187 Query 1289 AAAACAAAGAAATATACGCACAAGGAAGTG 1318 ||||| |||||||| ||||||||||||| Sbjct 2186 TCAACAAGGAAATATATGCACAAGGAAGTG 2157 >seq30888 Length=1567 Score = 89.7 bits (98), Expect = 1e-14 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 943 TATATCGAAGTAATAAAAAATCATTTTAACGTAACTAGCCCAGATGCTAGATTACAACGA 1002 || || ||| | || ||| ||| || |||||| || |||||| || | ||||| Sbjct 1321 TACATTGAAATCATCAAAGCTCACTTCGGCGTAACCTCACCTGATGCTCGACTGCAACGC 1380 Query 1003 CCAGAATATCTTGGTGGCGGAAGCTCACCGGTAAATATCAGTCCGGTCGCACAAACATCG 1062 || ||||| ||||| ||||| |||| | |||||||||||||| ||||||| ||| Sbjct 1381 CCTGAATACCTTGGCGGCGGTTCTTCACGTATCAATATCAGTCCGGTGCCACAAACGTCG 1440 Query 1063 TCAACTGATGCAACAACACCGCAAGGTAA 1091 || |||| |||| || ||||||||||| Sbjct 1441 TCTTCTGACACAACCACCCCGCAAGGTAA 1469 >seq23138 Length=2236 Score = 77.0 bits (84), Expect = 8e-11 Identities = 271/411 (66%), Gaps = 32/411 (8%) Strand=Plus/Plus Query 982 CCAGATGCTAGATTACAACGACCAGAATATCTTGGTGGCGGAAGCTCA--CCG-GTAAAT 1038 || ||||| || ||||||| || ||||| |||||||| ||| ||| ||| || ||| Sbjct 960 CCTGATGCGAGGCTACAACGTCCTGAATACCTTGGTGGAGGA---TCAACCCGTGTCAAT 1016 Query 1039 ATCAGTCCGGTCGCACAAACATCGTCAACTGATGCAACAACACCGCAAGGTAACTTATCG 1098 | || || | ||||| || || || ||||| || || || || || || | | Sbjct 1017 GTTTCGCCTGTTCCTCAAACTTCTTCTACAGATGCGACCACTCCCCAGGGCAATCTTGCT 1076 Query 1099 GCCATAGGTACAA-CGGTACTTAG-TGGCCACTCTTTTACAAAGAGTTTCACTGAACAT- 1155 || | ||||| |||| || | | |||| |||||| ||| |||||| ||||| Sbjct 1077 GCTTTCGGTACTGTCGGT--TTCGATCGCCATGGTTTTACTAAGTCTTTCACCGAACACG 1134 Query 1156 ---ACAATAGTAATAGGTATGGTATCTGTAAGAACAGATTTAACATACCAACAAGGACTG 1212 ||| | || || || | | ||| ||| | ||| | || || || |||||||| Sbjct 1135 GTCACA----TCATTGGAATTGCGTGTGTTAGAGCCGATCTTACCTATCAGCAAGGACTA 1190 Query 1213 AACAGAATGTTTAGTAG--AGAAACAATATACGATTACTACTGGCCAACCCTT--TCAAC 1268 ||| | |||| | | || | | ||| |||| || ||||| | ||| ||| | Sbjct 1191 AACCGGATGTGGTCTCGCCAGGACCGGTAT--GATTTTTATTGGCCTGCACTTGCTCACC 1248 Query 1269 GATTGGCGAACAAGCAGTCAAAAACAAAGAAATATACGCACAAGG---AAGTGCAGCCGA 1325 | ||||||||||| || || || ||||| || |||||||| ||| | | ||| Sbjct 1249 --TGGGCGAACAAGCCGTACTGAATAAGGAAATTTATGCACAAGGCACAAGCGATGACGA 1306 Query 1326 CGAAACTACGTTCGGCTATCAAGAGCGTTATGCGGAATATAGATACAAGCC 1376 |||| ||| ||||| || || || || |||||||| | ||||| || Sbjct 1307 CGAA---GTGTTTGGCTACCAGGAACGGTACGCGGAATACCGCTACAAACC 1354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13091997122140