Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephydra_20gracilis_20[genbank_20GCA_5F001014675.1_202015-05-28] 61,434 sequences; 410,872,512 total letters Query= NC_027637.1 Length=4656 Score E Sequences producing significant alignments: (Bits) Value seq10870 132 1e-27 seq42511 123 7e-25 seq39822 122 3e-24 seq37323 114 4e-22 seq23138 91.5 4e-15 seq31691 89.7 2e-14 seq61318 87.8 5e-14 seq47410 82.4 2e-12 seq35099 78.8 3e-11 >seq10870 Length=2260 Score = 132 bits (146), Expect = 1e-27 Identities = 258/375 (69%), Gaps = 12/375 (3%) Strand=Plus/Minus Query 1057 CCTCAAGGTACTCTTTCTGCCTTTGCTACAGCTGTTGGTTATGATC---ATGGTTTTACT 1113 |||||||| | ||| ||| |||| || |||||| | ||||| | ||||||||| Sbjct 1250 CCTCAAGGCAACCTTGCTGGTTTTGGCAC---TGTTGGCTTTGATCGCCACGGTTTTACT 1194 Query 1114 AAGAGTTTCCCTGAACATGGTTTTATCCTTGGTCTTATGTCTATTCGTGCTGATTATACA 1173 ||| |||| | || |||||| |||| |||||||| | | |||| || || || Sbjct 1193 AAGTCTTTCACCGAGCATGGTCATATCATTGGTCTTGCTTGTGTTCGGGCAGACCTGACT 1134 Query 1174 TATCAGCAGGGTGCTGAAAGAT-TCTGGTTCCGCAAAGCTCGTTTCGATCTTTATACT-- 1230 |||||||| ||| |||| | | |||| |||| | | ||||| ||| || |||| Sbjct 1133 TATCAGCAAGGTT-TGAACCGTATGTGGTCCCGCCAGGATCGTTATGAT--TTCTACTGG 1077 Query 1231 CCTGAGTTTGCTAATCTTGGCGAACAAGCCGTTTTAAACCAAGAGATTTATGCTCAAGGA 1290 || | ||||| |||| || || || || || || || | ||||||||||| ||||| Sbjct 1076 CCCGCTCTTGCTCATCTGGGTGAGCAGGCGGTATTGAATAAGGAGATTTATGCGCAAGGT 1017 Query 1291 ACTTCTGCTGATCAAGAGCCTTTTGGTTACCAAGAAGCATGGGCTGAATTGCGTTATAAG 1350 || ||| | ||| | || || ||||| ||||| | ||||||| ||||||||| Sbjct 1016 ACGTCTACCGATGATGAAGTGTTCGGTTATCAAGAGCGGTACGCTGAATACCGTTATAAG 957 Query 1351 CCTTCTCGTATTTCTGGTTATTTTCGAAGTAATGCCACTGGTACTTTAGATGCTTGGCAT 1410 ||||| | || | ||| ||| || |||||| || |||| ||| | ||||| Sbjct 956 CCTTCGCAGATCACGGGTGCTTTCCGCTCAAATGCCGCTACCTCTTTGGATACCTGGCAC 897 Query 1411 TTATCCCAGGAATTT 1425 | || ||||||||| Sbjct 896 CTGTCTCAGGAATTT 882 >seq42511 Length=5077 Score = 123 bits (136), Expect = 7e-25 Identities = 253/375 (67%), Gaps = 6/375 (2%) Strand=Plus/Minus Query 1054 TCGCCTCAAGGTACTCTTTCTGCCTTTGCTACAGCTGTTGGTTATGATCAT---GGTTTT 1110 ||||| || |||| |||| | || |||| || |||||||| ||||| | |||||| Sbjct 4539 TCGCCACAGGGTAATCTTGCGGCGTTTGGCAC---TGTTGGTTTTGATCGTCACGGTTTT 4483 Query 1111 ACTAAGAGTTTCCCTGAACATGGTTTTATCCTTGGTCTTATGTCTATTCGTGCTGATTAT 1170 || || ||| |||| ||||| ||| ||||| || | |||| || || Sbjct 4482 ACAAAATCCTTCACTGAGCATGGACATATTATTGGTATTGCTTGCGTTCGGGCCGACCTA 4423 Query 1171 ACATATCAGCAGGGTGCTGAAAGATTCTGGTTCCGCAAAGCTCGTTTCGATCTTTATACT 1230 || ||||| |||||| | | | | |||| |||| ||| ||| | ||| |||| Sbjct 4422 ACTTATCAACAGGGTCTTAATCGCATGTGGTCCCGCCAAGATCGCTATGATTTTTACTGG 4363 Query 1231 CCTGAGTTTGCTAATCTTGGCGAACAAGCCGTTTTAAACCAAGAGATTTATGCTCAAGGA 1290 |||| ||||| | ||||| |||||||| || | || |||| |||||||| |||||| Sbjct 4362 CCTGCACTTGCTCACCTTGGTGAACAAGCTGTACTCAATAAAGAAATTTATGCACAAGGA 4303 Query 1291 ACTTCTGCTGATCAAGAGCCTTTTGGTTACCAAGAAGCATGGGCTGAATTGCGTTATAAG 1350 || ||||| ||| | || || ||||| || ||| | || |||| ||||| ||| Sbjct 4302 ACCTCTGCAGATGACGAAGTCTTCGGTTATCAGGAACGCTATGCAGAATACCGTTACAAG 4243 Query 1351 CCTTCTCGTATTTCTGGTTATTTTCGAAGTAATGCCACTGGTACTTTAGATGCTTGGCAT 1410 || || ||| |||| ||| ||||||||||| | | | | || | |||||| Sbjct 4242 CCAAGTCTCATTACTGGAGCATTTAGAAGTAATGCCGCCACTTCACTCGACACCTGGCAT 4183 Query 1411 TTATCCCAGGAATTT 1425 || || || || ||| Sbjct 4182 TTGTCGCAAGACTTT 4168 >seq39822 Length=5133 Score = 122 bits (134), Expect = 3e-24 Identities = 335/511 (66%), Gaps = 12/511 (2%) Strand=Plus/Plus Query 128 TTCTTATTGATGAGATTTATCCTGGCGATACTTTTAAGCTTCGTTCTACTTTTCTTGCTC 187 || || ||||||| ||| || || ||||||||||| || | |||| | |||||| Sbjct 2028 TTTTTGTTGATGAAGTTTTGCCCGGGGATACTTTTAAAGTTAATCTTACTGGTTTTGCTC 2087 Query 188 GTATGTCTACTCCCATTTATCCGGTTATGGACAATTTATTCATCGATACCCAATTTTTCT 247 || | ||||||||| || || | ||||| ||| | || || |||||| ||||| Sbjct 2088 GTCTTGCTACTCCCACTTTCCCTATAATGGATAATATGTTTATGGATACCTTCTTTTTTG 2147 Query 248 TTATACCCAATCGTTTACTTTGGACCCACTGGGAGCAGTTTATGGGTTACCAAGAAAACC 307 | || ||||| | ||||| | ||| || ||||| || | || | || | Sbjct 2148 CGGTTCCGTATCGTCTTGTTTGGGGTAATTGGCAGAAGTTTTGTGGAGAGCAGGTTAATC 2207 Query 308 CTGGCGATTCTATCGATTACACTTTGCCTACTATTACT-AGTCC--TACTGGTGGTTATT 364 |||| ||| ||| ||||||||| | |||| |||| | | | | || || |||| || Sbjct 2208 CTGGGGATAGTATTGATTACACTGTCCCTATAATTAATGATTTCAATAATGCTGGTAATG 2267 Query 365 TAGAGCAAACTATTTATGACTATCTTGGCCTCCCTACTAAGATTGCTGGTGTTACCCA-- 422 || | | | || ||| |||| || ||||| || |||||| | | | Sbjct 2268 ------AATCATTATGGGATTATTTTGGACTTCCTACCCAGGTTGCTGAAGATCTTGAGA 2321 Query 423 -TCAAGCACTTCCTTTGCGTGCTTACAACAAGGTTTATAATGATTGGTATCGCGATCAGA 481 | | || ||| | || ||||| || | || ||||| |||| ||| ||||| | Sbjct 2322 TTAATGCTCTTGTTCCCCGGGCTTATAATCTTATATACAATGAATGGTTTCGTGATCAAA 2381 Query 482 ATTTACAAGATTCTGTTGTTTTGCCTAATGGTGATGGTCCTGATGCTCCTACTGATTATG 541 |||| ||||||||| | | | || || ||||||||||||| || | |||||||| Sbjct 2382 ATTTGCAAGATTCTTTGACTGTTAATACTGATGATGGTCCTGATCCTGTTGCTGATTATT 2441 Query 542 TTTTGTTGCCTCGTGGTAAACGCCACGATTATTTTACCTCTGCACTTCCTACACCTCAGA 601 |||| | | ||||||| || |||||||||||||| |||||| | || | Sbjct 2442 CTTTGCAACGAAGGTGTAAACGTCATGATTATTTTACCTCGTGTCTTCCTTGGACACAAA 2501 Query 602 AGGGTGCTGCTGTTCAGCTTCCACTTGGTAC 632 | |||| ||| |||| ||| | | ||||| Sbjct 2502 AAGGTGATGCCGTTCTTCTTTCTTTAGGTAC 2532 >seq37323 Length=4379 Score = 114 bits (126), Expect = 4e-22 Identities = 384/591 (65%), Gaps = 14/591 (2%) Strand=Plus/Minus Query 68 CTATTTTTAATCGTACTTTTACTCATAAGACTACTTGTAACGCCGGTATGTTGATTCCGT 127 ||| |||| ||||| ||| | | | || || ||| |||||| || | | || || Sbjct 3351 CTACTTTTGATCGTTCTTCTGGTTACAAAACCACTCTTAACGCTGGAAAACTTATCCCTG 3292 Query 128 TTCTTATTGATGAGATTTATCCTGGCGATACTTTTAAGCTTCGTTCTACTTTTCTTGCTC 187 || || |||||||| || ||||| ||||||||| | || ||||| | | | | Sbjct 3291 TTTTTGTTGATGAGGCTTTGCCTGGTGATACTTTTGATGTTAAAGCTACTATGTTCGGTA 3232 Query 188 GTATGTCTACTCCCATTTATCCGGTTATGGACAATTTATTCA--TCGATACCCAATTTTT 245 | | ||| || || || ||||||| ||| ||| | | || | || ||||| Sbjct 3231 GGCTTAATACACCTCTTGTCCCAATTATGGATAAT--ATTAAATTTGACATGCACTTTTT 3174 Query 246 CTTTATACCCAATCGTTTACTTTGGACCCACTGGGAGCAGTTTATGGGTTACCAAGAAAA 305 | | || |||||| | ||| | ||||| | ||||||||| | ||||| || Sbjct 3173 TAGTGTTCCTTGTCGTTTGGTCTGGGACAACTGGCAAAGATTTATGGGTGAACAAGATAA 3114 Query 306 CCCTGGCGATTCTATCGATTACACTTTGCCTACTATTACTAGTCCTACTGGTGGTTATTT 365 |||| |||||||| |||||| | || ||| || || | ||||| | | || Sbjct 3113 CCCTAATGATTCTATAGATTACTTAATACCAACTCTTGATA---CAACTGGAGTACAATT 3057 Query 366 AGAGCAA-ACTATTTAT--GACTATCTTGGCCTCCCTACTAAGATTGCTGGTGTTACCCA 422 | || | | ||||| ||||| |||| || |||||||| || ||| | || | Sbjct 3056 CAATGAAGATTCTTTATTCGACTACTTTGGTCTTCCTACTAAAGTTTCTGATCTTCTTAA 2997 Query 423 TC---AAGCACTTCCTTTGCGTGCTTACAACAAGGTTTATAATGATTGGTATCGCGATCA 479 | | || |||||||| | || || ||| ||| |||||||||||| | Sbjct 2996 TGTTAATGCTCTTCCTTTTAGAAGCTATAATTTAATTTTTAACACGTGGTATCGCGATGA 2937 Query 480 GAATTTACAAGATTCTGTTGTTTTGCCTAATGGTGATGGTCCTGATGCTCCTACTGATTA 539 ||| ||||||||||||||| | | ||| |||||||||||||| ||| |||||||| Sbjct 2936 GAACTTACAAGATTCTGTTACTGTAAATAAAGGTGATGGTCCTGACGCTTTAACTGATTA 2877 Query 540 TGTTTTGTTGCCTCGTGGTAAACGCCACGATTATTTTACCTCTGCACTTCCTACACCTCA 599 | | | | | |||||| | ||||| ||||| ||||| || || |||| Sbjct 2876 CACTATACTTGATAGAAATAAACGTAAAGATTACTTTACGTCTGCTCTCCCGTTCGCTCA 2817 Query 600 GAAGGGTGCTGCTGTTCAGCTTCCACTTGGTACTACCGCACCTATT-TTAT 649 || |||| | ||||| |||||||||| || | || ||| || |||| Sbjct 2816 AAAAGGTGATCCTGTTTCAATTCCACTTGGCACCTCTGCTCCTGTTATTAT 2766 >seq23138 Length=2236 Score = 91.5 bits (100), Expect = 4e-15 Identities = 327/508 (64%), Gaps = 34/508 (7%) Strand=Plus/Plus Query 793 GGTTTATATGCTGATCTCTCTTCTGCTACTAGTGCTACTATTAATGATTTGCGT----CT 848 || || | |||||| || || |||||| ||| || ||||||||||||||| | Sbjct 813 GGATTGTTTGCTGACCTTTCAGATGCTACAGCTGCGACAATTAATGATTTGCGTGAAGCG 872 Query 849 TTCCATTGCCACCCAACAATATCTTGAACGTGATATGCGTAGTGGCACACGTTACACTGA 908 ||||| || || ||| || |||||||| ||| |||||||| |||||||| Sbjct 873 TTCCAGGTTCA---AAAAATG-CTCGAACGTGACGCGCGATCCGGCACACGGTACACTGA 928 Query 909 AGTGTTGCTTGGACATTGGGGAATTGCTGCCCAGGACGCCCGTTTGCAACGTAGCGAATA 968 | | | | | |||| || | | | | || || | | |||||| ||||| Sbjct 929 AATTATTCAAGCGCATTTTGGTGTGACCTCACCTGATGCGAGGCTACAACGTCCTGAATA 988 Query 969 TCTTGGTGGCGGTTCAACACAGATTAATTTCCATCCTGTCGCTCAGACTGCACCTTCTGA 1028 |||||||| || ||||| | | ||| | ||||| |||| ||| | || | || Sbjct 989 CCTTGGTGGAGGATCAACCCGTGTCAATGTTTCGCCTGTTCCTCAAACTTCTTCTACAGA 1048 Query 1029 TGCATCTGGTTCTGGTGAGGAATCCTCGCCTCAAGGTACTCTTTCTGCCTTTGCTACAGC 1088 ||| || || | || || || | |||| |||| || | ||| Sbjct 1049 TGC----------------GA--CCACTCCCCAGGGCAATCTTGCTGCTTTCGGTAC--- 1087 Query 1089 TGTTGGTTATGATC---ATGGTTTTACTAAGAGTTTCCCTGAACATGGTTTTATCCTTGG 1145 ||| |||| |||| |||||||||||||| |||| | ||||| ||| ||| |||| Sbjct 1088 TGTCGGTTTCGATCGCCATGGTTTTACTAAGTCTTTCACCGAACACGGTCACATCATTGG 1147 Query 1146 TCTTATGTCTATTCGTGCTGATTATACATATCAGCAGGGTGCTGAA-AGATTCTGGTTCC 1204 || || | || | || ||| ||| |||||||| || || || | | |||| | Sbjct 1148 AATTGCGTGTGTTAGAGCCGATCTTACCTATCAGCAAGG-ACTAAACCGGATGTGGTCTC 1206 Query 1205 GCAAAGCTCGTTTCGATCTTTATACTCCTGAGTTTGCTAATCTTGGCGAACAAGCCGTTT 1264 || | | || | ||| ||||| |||| ||||| | || |||||||||||||| Sbjct 1207 GCCAGGACCGGTATGATTTTTATTGGCCTGCACTTGCTCACCTGGGCGAACAAGCCGTAC 1266 Query 1265 TAAACCAAGAGATTTATGCTCAAGGAAC 1292 | || | || |||||||| ||||| || Sbjct 1267 TGAATAAGGAAATTTATGCACAAGGCAC 1294 >seq31691 Length=1813 Score = 89.7 bits (98), Expect = 2e-14 Identities = 148/210 (70%), Gaps = 8/210 (4%) Strand=Plus/Minus Query 1057 CCTCAAGGTACTCTTTCTGCCTTTGCTACAGCTGTTGGTTATGA---TCATGGTTTTACT 1113 |||||||| | |||| ||| ||||| ||| ||| |||| || ||||||||| ||| Sbjct 848 CCTCAAGGGAATCTTGCTGGCTTTGGTAC---TGTCGGTTTCGACCGTCATGGTTTCACT 792 Query 1114 AAGAGTTTCCCTGAACATGGTTTTATCCTTGGTCTTATGTCTATTCGTGCTGATTATACA 1173 ||| |||| | || || ||| |||| |||| || | | || | || |||| || Sbjct 791 AAGTCTTTCACCGAGCACGGTCATATCATTGGCCTCGCTTGTGTTAGAGCAGATTTGACC 732 Query 1174 TATCAGCAGGGTGCTGAA-AGATTCTGGTTCCGCAAAGCTCGTTTCGATCTTTATACTCC 1232 ||||||||||| |||||| | | |||| ||| ||| |||| ||| |||| || Sbjct 731 TATCAGCAGGG-GCTGAACCGTATGTGGTCCCGGCAAGGCCGTTATGATTTTTACTGGCC 673 Query 1233 TGAGTTTGCTAATCTTGGCGAACAAGCCGT 1262 || | ||||| || |||| || || ||||| Sbjct 672 TGCGCTTGCTCATATTGGTGAGCAGGCCGT 643 >seq61318 Length=2697 Score = 87.8 bits (96), Expect = 5e-14 Identities = 201/300 (67%), Gaps = 2/300 (1%) Strand=Plus/Minus Query 1057 CCTCAAGGTACTCTTTCTGCCTTTGCTACAGCTGTTGGTTATGATCATGGTTTTACTAAG 1116 |||||||||| | | |||| ||| ||| | | | | || ||||||||||||||| Sbjct 2248 CCTCAAGGTAATTTGGCTGCTATTGGTACTGGTTCTTTTAGTGGTCATGGTTTTACTAAA 2189 Query 1117 AGTTTCCCTGAACATGGTTTTATCCTTGGTCTTATGTCTATTCGTGCTGATTATACATAT 1176 |||| | || || || | ||| |||| ||| | ||| || | || || || ||| Sbjct 2188 TCTTTCACCGAGCACTGTATCATCATTGGCCTTGTTTCTGTTAGGGCAGACCTGACCTAT 2129 Query 1177 CAGCAGGGTGCTGAA-AGATTCTGGTTCCGCAAAGCTCGTTTCGATCTTTATACTCCTGA 1235 || || || | |||| ||| | ||| | | ||| |||| ||| |||| || | Sbjct 2128 CAACAAGG-GTTGAATAGAATGTGGAGCAGACAAGGACGTTATGATTTTTACTGGCCAGC 2070 Query 1236 GTTTGCTAATCTTGGCGAACAAGCCGTTTTAAACCAAGAGATTTATGCTCAAGGAACTTC 1295 | |||| ||||||| || || ||||| | || | || ||||| |||||||| | | Sbjct 2069 GCTTGCCCATCTTGGTGAGCAGGCCGTACTTAATAAGGAAATTTACGCTCAAGGTAATAG 2010 Query 1296 TGCTGATCAAGAGCCTTTTGGTTACCAAGAAGCATGGGCTGAATTGCGTTATAAGCCTTC 1355 ||||||| | || |||||||| || ||| | || |||| | |||||||| || Sbjct 2009 TGCTGATGAGGATGTGTTTGGTTATCAGGAACGGTATGCGGAATATAGGTATAAGCCGTC 1950 >seq47410 Length=4736 Score = 82.4 bits (90), Expect = 2e-12 Identities = 94/124 (76%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 460 AATGATTGGTATCGCGATCAGAATTTACAAGATTCTGTTGTT-TTGCCTAATGGTGATGG 518 ||||| |||| || ||||| ||| | ||||| ||||||||| ||| | | | |||||| Sbjct 3709 AATGAATGGTTCCGTGATCAAAATCTTCAAGACTCTGTTGTTGTTGATTTA-GATGATGG 3767 Query 519 TCCTGATGCTCCTACTGATTATGTTTTGTTGCCTCGTGGTAAACGCCACGATTATTTTAC 578 | |||| ||| | ||||||||| | || || || || ||||| || ||||||||||| Sbjct 3768 TATTGATAATCCAAACGATTATGTTCTCTTACCACGCGGAAAACGTCATGATTATTTTAC 3827 Query 579 CTCT 582 ||| Sbjct 3828 TTCT 3831 >seq35099 Length=5021 Score = 78.8 bits (86), Expect = 3e-11 Identities = 85/113 (75%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 533 CTGATTATGTTTTGTTGCCTCGTGGTAAACGCCACGATTATTTTACCTCTGCACTTCCTA 592 ||||||||||| || ||| |||||||||| | || || || ||||| ||| | || Sbjct 3609 CTGATTATGTTCTGCTGCGTCGTGGTAAAAGACATGACTACTTTACGTCTTGTTTGCCCT 3550 Query 593 CACCTCAGAAGGGTGCTGCTGTTCAGCTTCCACTTGGTACTACCGCACCTATT 645 | ||||||||||||| | || |||||||||||||| || || |||||| Sbjct 3549 CTCCTCAGAAGGGTGATAGCGTGTCTCTTCCACTTGGTACAACTGCCCCTATT 3497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14777263972010