Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephydra_20gracilis_20[genbank_20GCA_5F001014675.1_202015-05-28] 61,434 sequences; 410,872,512 total letters Query= NC_027644.1 Length=4686 Score E Sequences producing significant alignments: (Bits) Value seq61127 102 2e-18 seq61406 89.7 2e-14 seq44590 82.4 2e-12 seq39822 82.4 2e-12 >seq61127 Length=1849 Score = 102 bits (112), Expect = 2e-18 Identities = 135/187 (72%), Gaps = 3/187 (2%) Strand=Plus/Plus Query 983 CTCGTGGTGGTACTCGTTATGCTGAGGTTTTAAAACAACATTTTGGTGTTTATTCTTCTG 1042 |||| | |||| |||||||| ||||| |||| ||| |||||| |||| | | || || Sbjct 591 CTCGCGCTGGTGCTCGTTATACTGAGTTTTTGAAAGCACATTTCGGTGCGTTTCCTCGTG 650 Query 1043 ATGCTCGCTTGCAACGTCCTGAGTATCTTGGTGGTACTAATCAACCTATTGTTATTTCTG 1102 ||| || || || ||||| |||||| |||||||| | || || || | || | |||| Sbjct 651 ATGAGCGTTTACAGCGTCCGGAGTATATTGGTGGTTCGAAACAGCCGTTGGTAGTGTCTG 710 Query 1103 AGGTATTGAATACTACTGGTACTGAT---ACTGCCCCTCAAGGTCAAATGGCTGGTCATG 1159 | |||||| | || | |||| ||| || | || |||||| | | |||||||||| Sbjct 711 AAGTATTGCAGACGTCGAGTACGGATGCGACGTCGCCGCAAGGTAATTTAGCTGGTCATG 770 Query 1160 GTATCTC 1166 |||| || Sbjct 771 GTATTTC 777 >seq61406 Length=4454 Score = 89.7 bits (98), Expect = 2e-14 Identities = 244/369 (66%), Gaps = 20/369 (5%) Strand=Plus/Plus Query 983 CTCGTGGTGGTACTCGTTATGCTGAGGTTTTAAAACAACATTTTGGTGTTTATTCTTCTG 1042 ||||||||||| | |||||| ||| || |||||||||||| | || || | Sbjct 2103 CTCGTGGTGGTTCACGTTATATCGAGCAAATACTTTCTCATTTTGGTGTTAAATCATCGG 2162 Query 1043 ATGCTCGCTTGCAACGTCCTGAGTATCTT-GGTGGTACTAATCAACCTATTGTTATTTCT 1101 |||| ||||| |||||||| |||| |||| |||||| || ||| | |||||||| Sbjct 2163 ATGCCCGCTTACAACGTCCAGAGT-TCTTAGGTGGTGGAAAATCTCCTGTAGTTATTTCA 2221 Query 1102 GAGGTATTGAATACTACTGGTACTGATAC---TGCCCCTCAAGGTCAAATGGCTGGTCAT 1158 ||||| || | || ||| |||||| || | || |||| | | |||||||||||| Sbjct 2222 GAGGTTTTACAAACCTCTGCTACTGAAACAGGTAGTCCACAAGCTAACATGGCTGGTCAT 2281 Query 1159 GGTATCTCTGCTGCTGCTCATAATCAGGGCATTCATTACTATGCCGAAGAACATGGTGTT 1218 ||| | ||| || ||| | ||| || | | || || ||||||||| || Sbjct 2282 GGTGT---TGCGATTGGTCAAAGTCATTCTTTTAAAAAGTACTTTGAGGAACATGGTTTT 2338 Query 1219 ATCATGGGTCTTATGTCTGTTCTTCCTAAGACAGGTTATTATCAAGGTTATGAAAAACGt 1278 | || ||| | ||||| || | ||| || |||| |||| || || |||| Sbjct 2339 GTTATAGGTATCATGTCCGTATTACCTCGTACTACTTATAATCACGG------AACACGT 2392 Query 1279 ---ttttttCGTCAGTCTCGT---TTGGATTTTCCCTGGCCTGAATTTGCAGAGCTTGGT 1332 | ||||| | | | | || |||| | |||||||||||||||| | | ||| Sbjct 2393 CGGATGTTTCGCAAATTTGATAAGTTTGATTATTTCTGGCCTGAATTTGCAAATTTGGGT 2452 Query 1333 GAACAGCCT 1341 || || ||| Sbjct 2453 GAGCAACCT 2461 >seq44590 Length=4521 Score = 82.4 bits (90), Expect = 2e-12 Identities = 89/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 959 TTCAAAAATTTCTTGAAGCTGACTCTCGTGGTGGTACTCGTTATGCTGAGGTTTTAAAAC 1018 ||||||| || || || |||| |||| ||||| ||||||||| ||| || | Sbjct 2790 TTCAAAAGTTGCTCGAGCGTGACGCTCGAGGTGGCACTCGTTATATCGAGCTTATTTTGT 2849 Query 1019 AACATTTTGGTGTTTATTCTTCTGATGCTCGCTTGCAACGTCCTGAGTATCTTGGTGG 1076 ||||||||||| |||| ||||||||| |||||||| || |||||||||||||| Sbjct 2850 CGCATTTTGGTGTGCGTTCTGATGATGCTCGTTTGCAACGGCCCGAGTATCTTGGTGG 2907 >seq39822 Length=5133 Score = 82.4 bits (90), Expect = 2e-12 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 990 TGGTACTCGTTATGCTGAGGTTTTAAAACAACATTTTGGTGTTTATTCTTCTGATGCTCG 1049 ||||||||||||| | ||| || ||| | |||||||||||| |||| |||||||||| Sbjct 2776 TGGTACTCGTTATACAGAGATTGTAAGATCTCATTTTGGTGTTACTTCTGCTGATGCTCG 2835 Query 1050 CTTGCAACGTCCTGAGTATCTTGGTGGT 1077 || ||||| || |||||||| || ||| Sbjct 2836 GTTACAACGGCCGGAGTATCTCGGAGGT 2863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14873199466310