Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephydra_20gracilis_20[genbank_20GCA_5F001014675.1_202015-05-28] 61,434 sequences; 410,872,512 total letters Query= NC_029012.1 Length=4623 Score E Sequences producing significant alignments: (Bits) Value seq61406 140 1e-29 seq61404 77.0 1e-10 >seq61406 Length=4454 Score = 140 bits (154), Expect = 1e-29 Identities = 196/275 (71%), Gaps = 0/275 (0%) Strand=Plus/Plus Query 922 CAGCGTTGGTTTGAGCGTAATGCCCGTTCTGGTTCTCGTTATATCGAGCAGATCCTCTCG 981 || || ||||| ||||||||||| ||| |||||| |||||||||||||| || || || Sbjct 2081 CAACGATGGTTAGAGCGTAATGCTCGTGGTGGTTCACGTTATATCGAGCAAATACTTTCT 2140 Query 982 CATTTCGGTGTACGTAGTTCTGACGCTCGTTTGCAGCGTCCGCAGTTCCTCGGTGGTGGT 1041 ||||| ||||| || || || || || || ||||| ||||| | |||||||| Sbjct 2141 CATTTTGGTGTTAAATCATCGGATGCCCGCTTACAACGTCCAGAGTTCTTAGGTGGTGGA 2200 Query 1042 CGTACCCCCATTTCTGTTTCCGAGGTTCTTCAAACGTCTGCTACTGATTCCACCAGTCCG 1101 | || | | |||| |||||| | ||||| ||||||||||| | ||||| Sbjct 2201 AAATCTCCTGTAGTTATTTCAGAGGTTTTACAAACCTCTGCTACTGAAACAGGTAGTCCA 2260 Query 1102 CAGGCGAATATGGCCGGACATGGTATTTCCGCTGGTGTTAATCATGGCTTTAAGCGTTAC 1161 || || || ||||| || |||||| || | |||| | |||| ||||| ||| Sbjct 2261 CAAGCTAACATGGCTGGTCATGGTGTTGCGATTGGTCAAAGTCATTCTTTTAAAAAGTAC 2320 Query 1162 TTTGAGGAGCATGGATATATTATCGGTATTATGTC 1196 |||||||| ||||| | | |||| ||||| ||||| Sbjct 2321 TTTGAGGAACATGGTTTTGTTATAGGTATCATGTC 2355 >seq61404 Length=4289 Score = 77.0 bits (84), Expect = 1e-10 Identities = 181/266 (68%), Gaps = 12/266 (5%) Strand=Plus/Plus Query 940 AATGCCCGTTCTGGTTCTCGTTATATCGAGCAGATCCTCTCGCATTTCGGTGTACGTAGT 999 ||||| ||| | || || |||||||| ||||| || | || |||||||||||| ||| Sbjct 3057 AATGCTCGTGCCGGATCACGTTATATTGAGCAAATATTATCCCATTTCGGTGTA--AAGT 3114 Query 1000 --TCTGACGCTCGTTTGCAGCGTCCGCAGTTCCTCGGTGGTGGTCGTACCCCCATTTCTG 1057 || || ||||| || | || | ||| | |||||||| | ||| | Sbjct 3115 CATCGGATAGCCGTTTACAAAGACCTGAATTCTTAGGTGGTGGAAAAATGCCCGTACAAA 3174 Query 1058 TTTCCGAGGTTCTTCAAACGTCTGCTACTGATTC--CACCAGTCCGCAGGCGAATATGGC 1115 |||| |||||| | ||||| || || ||||| | | || || |||| || || | Sbjct 3175 TTTCAGAGGTTTTACAAACATCAGCCACTGAAGCAGGATCA--CCACAGGGTAACTTGTC 3232 Query 1116 CGGACATGGTATTTCCGCTGGT--GTTAATCATGGCTTTAAGCGTTACTTTGAGGAGCAT 1173 ||||||||||| | |||||| ||| || || ||||| | ||||||||||| Sbjct 3233 AGGACATGGTATAACAGCTGGTAAAGTAA-CA-GGATTTAAAAGGAGATTTGAGGAGCAC 3290 Query 1174 GGATATATTATCGGTATTATGTCTAT 1199 |||||| | || ||| | |||||||| Sbjct 3291 GGATATGTAATTGGTTTAATGTCTAT 3316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14671734928280