Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephydra_20gracilis_20[genbank_20GCA_5F001014675.1_202015-05-28] 61,434 sequences; 410,872,512 total letters Query= NC_029014.1 Length=5001 Score E Sequences producing significant alignments: (Bits) Value seq61406 125 2e-25 seq61127 95.1 4e-16 seq61404 89.7 2e-14 seq883 80.6 8e-12 seq29951 78.8 3e-11 >seq61406 Length=4454 Score = 125 bits (138), Expect = 2e-25 Identities = 370/551 (67%), Gaps = 37/551 (7%) Strand=Plus/Plus Query 967 CAGCGTTGGTTCGAACGTAACGCTCGTGGTGGTTCTCGTTATATTGAACAGATTCTGTCA 1026 || || ||||| || ||||| |||||||||||||| |||||||| || || || || || Sbjct 2081 CAACGATGGTTAGAGCGTAATGCTCGTGGTGGTTCACGTTATATCGAGCAAATACTTTCT 2140 Query 1027 CACTTTGGTGTTCGTTCATCTGATGCGCGTTTACAGCGTCCGCAGTTCCTCGGTGGCGGT 1086 || ||||||||| ||||| ||||| || ||||| ||||| ||||| | ||||| || Sbjct 2141 CATTTTGGTGTTAAATCATCGGATGCCCGCTTACAACGTCCAGAGTTCTTAGGTGGTGGA 2200 Query 1087 CGTATGCCTATTTCTGTGTCGGAAGTATTGCAAACATCCTCGACTGATGAAACGT-CACC 1145 ||| | | | || || || || ||||| || | ||||| | | || || Sbjct 2201 AAATCTCCTGTAGTTATTTCAGAGGTTTTACAAACCTCTGCTACTGA-AACAGGTAGTCC 2259 Query 1146 GCAGGCAAATATGGCCGGACATGGTATTTCTGCTGGAATCAA--TAACGGTTTCAAGCAT 1203 || || || ||||| || |||||| || | ||| |||| | | ||| || | Sbjct 2260 ACAAGCTAACATGGCTGGTCATGGTGTTGCGATTGG--TCAAAGTCATTCTTTTAAAAAG 2317 Query 1204 TATTTTGAAGAGCATGGATATATTATCGGTATCATGTC--TATTACTCCGCGTTCCGGCT 1261 || ||||| || ||||| | | |||| ||||||||||| ||||| || ||| | | Sbjct 2318 TACTTTGAGGAACATGGTTTTGTTATAGGTATCATGTCCGTATTA--CCTCGTACTACTT 2375 Query 1262 ATCAACAGGGTGTTCCGCGTGATTTTACG-AAGTTTGATAACATGGATTTCTATTTC--- 1317 || | || || | || ||| || || || |||||||| | ||| |||||| Sbjct 2376 ATAATCACGGAACACGTCG-GATGTTTCGCAAATTTGATAAGTTTGAT---TATTTCTGG 2431 Query 1318 CCGGAATTTGCCCATTT--GTCAG-AACAGGAA----ATTAAGAATCAAGAATTGTTTGT 1370 || |||||||| |||| || || ||| | | ||| |||| | || | | | Sbjct 2432 CCTGAATTTGCAAATTTGGGTGAGCAACCTGTATATGATTTTGAATTATTTATGGATAAT 2491 Query 1371 ATCTGAAGATGCAG----CTTACAATAATGGTACGTTTGGTTATACTCCGCGTTATGCTG 1426 || | |||| | ||||||| || | ||||| ||| |||||||||| | Sbjct 2492 -TCAAAGGATGAGGAGGAATTACAAT-CTGAAATATTTGGATATCAATCGCGTTATGCGG 2549 Query 1427 AATATAAGTATCATCCTTCGGAAGCTCATGGCGATTTCCGT---GGT-AATCTTT--CAT 1480 ||||||| || |||||| |||||||| ||||| ||| ||| ||||||| || Sbjct 2550 AATATAAACATATTCCTTCTACTGCTCATGGTGATTTTCGTTCAGGTGAATCTTTAGAAT 2609 Query 1481 TTTGGCATTTG 1491 |||||||| || Sbjct 2610 TTTGGCATATG 2620 >seq61127 Length=1849 Score = 95.1 bits (104), Expect = 4e-16 Identities = 264/394 (67%), Gaps = 42/394 (11%) Strand=Plus/Plus Query 973 TGGTTCGAACGTAACGCTCGTGGTGGTTCTCGTTATATTGAACAGATTCTGT---CACAC 1029 ||| | || ||||| ||||| | |||| ||||||||| ||| | || || |||| Sbjct 575 TGGATGGAGCGTAATGCTCGCGCTGGTGCTCGTTATACTGA---GTTTTTGAAAGCACAT 631 Query 1030 TTTGGTGTTCGTT-CATC-TGATGCGCGTTTACAGCGTCCGCAGTTCCTCGGTGGCGGTC 1087 || |||| |||| | || ||||| |||||||||||||||| ||| | ||||| || Sbjct 632 TTCGGTG--CGTTTCCTCGTGATGAGCGTTTACAGCGTCCGGAGTATATTGGTGGT--TC 687 Query 1088 GTAT--GCCTATTTCTGTGTCGGAAGTATTGCAAACATCCTCGACTGATGAAACGTCACC 1145 | | ||| | ||||| ||||||||||| || || || |||| ||||| || Sbjct 688 GAAACAGCCGTTGGTAGTGTCTGAAGTATTGCAGACGTCGAGTACGGATGCGACGTCGCC 747 Query 1146 GCAGGCAAATATGGCCGGACATGGTATTTCTGCTGGAATCAATAACGGTTT-----CAAG 1200 ||| | ||| | || || ||||||||||| | || | || | | |||| ||| Sbjct 748 GCAAGGTAATTTAGCTGGTCATGGTATTTC-GGTG--AACAGT--CAGTTTGTTGGAAAG 802 Query 1201 CATTATTTTGAAGAGCATGGATATATTATCGGTATCATGTCTATTACTCCGCGTTCCGGC 1260 | ||||||| ||| ||||| ||| | |||||||||| || || || Sbjct 803 TACAGAGCTGAAGAGTTTGGCGTAATTATGGGTCTGATGTCTATTATGCCACGGTCGATG 862 Query 1261 TATCAACAGGGTGT---TC-CGCGTGATTT-----TACGAAGTTTGATAACATGGATTTC 1311 ||| ||||||||| || | ||| ||| ||||||| | |||||| Sbjct 863 TATTCACAGGGTGTGGATCGCCAGTGGTTTCGAGAGACGAAGTAT---------GATTTC 913 Query 1312 TATTTCCCGGAATTTGCCCATTTGTCAGAACAGG 1345 ||||| ||||| ||||| |||||||| || |||| Sbjct 914 TATTTTCCGGAGTTTGCTCATTTGTCTGAGCAGG 947 >seq61404 Length=4289 Score = 89.7 bits (98), Expect = 2e-14 Identities = 203/303 (67%), Gaps = 2/303 (1%) Strand=Plus/Plus Query 943 GACCTTCGTACTTCGAATGCTTTGCAGCGTTGGTTCGAACGTAACGCTCGTGGTGGTTCT 1002 |||||| | || || |||| | || | ||| | ||| | || ||||||| || || Sbjct 3015 GACCTTAGAACGTCATATGCAATCCAAAGATGGATGGAAAGAAATGCTCGTGCCGGATCA 3074 Query 1003 CGTTATATTGAACAGATTCTGTCACACTTTGGTGTTCGTTCATCTGATGCGCGTTTACAG 1062 ||||||||||| || || | || || || ||||| ||||| ||| |||||||| Sbjct 3075 CGTTATATTGAGCAAATATTATCCCATTTCGGTGTAAAGTCATCGGATAGCCGTTTACAA 3134 Query 1063 CGTCCGCAGTTCCTCGGTGGCGGTCGTATGCCTATTTCTGTGTCGGAAGTATTGCAAACA 1122 | || | ||| | ||||| || ||||| | | || || || || |||||| Sbjct 3135 AGACCTGAATTCTTAGGTGGTGGAAAAATGCCCGTACAAATTTCAGAGGTTTTACAAACA 3194 Query 1123 TCCTCGACTGATGAAACGTCACCGCAGGCAAATATGGCCGGACATGGTATTTCTGCTGGA 1182 || | ||||| | | ||||| |||| || || | ||||||||||| | ||||| Sbjct 3195 TCAGCCACTGAAGCAGGATCACCACAGGGTAACTTGTCAGGACATGGTATAACAGCTGGT 3254 Query 1183 ATCAATAAC-GGTTTCAAGCATTATTTTGAAGAGCATGGATATATTATCGGTATCATGTC 1241 | | |||| || || || ||||| ||||| |||||| | || ||| | ||||| Sbjct 3255 A-AAGTAACAGGATTTAAAAGGAGATTTGAGGAGCACGGATATGTAATTGGTTTAATGTC 3313 Query 1242 TAT 1244 ||| Sbjct 3314 TAT 3316 >seq883 Length=3370 Score = 80.6 bits (88), Expect = 8e-12 Identities = 73/92 (79%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 181 GTGGCTCCTATGATGCACCGCGTGAATGTTTTTACTCACTATTTCTTTGTGCCGAATCGT 240 |||||||||||| | ||| || ||||| | ||| || ||||||||||||||| ||||| Sbjct 1428 GTGGCTCCTATGCTCCACGAGGTTAATGTCTATACCCATTATTTCTTTGTGCCGTATCGT 1487 Query 241 CTTGTGTGGAATGAATGGGAAGACTTCATAAC 272 | | | ||| | ||||||||||| || || || Sbjct 1488 CGTCTCTGGGACGAATGGGAAGATTTTATTAC 1519 >seq29951 Length=2574 Score = 78.8 bits (86), Expect = 3e-11 Identities = 103/139 (74%), Gaps = 4/139 (3%) Strand=Plus/Minus Query 1108 GAAGTATTGCAAACATCCTCGACTGATGAAACGTCACCGCAGGCAAATATGGCCGGACAT 1167 ||||||||||||||||| || ||||||| ||| || || || | | ||||| |||||| Sbjct 1912 GAAGTATTGCAAACATCATCAACTGATGCAACATCGCCACAAGGTACAATGGCTGGACAT 1853 Query 1168 GGTATTTCTGCTGGAATCAA-TAAC-GGTTTCAAGCATTATTTTGAAGAGCATGGATATA 1225 || | | || ||| ||| |||| || || || | |||||||| ||||||| | Sbjct 1852 GGAGTAACAGCAGGA--CAAGTAACAGGATTTAAAAGGTCATTTGAAGAACATGGATTTG 1795 Query 1226 TTATCGGTATCATGTCTAT 1244 | || ||||| |||||||| Sbjct 1794 TAATTGGTATTATGTCTAT 1776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15880522156460