Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephydra_20gracilis_20[genbank_20GCA_5F001014675.1_202015-05-28] 61,434 sequences; 410,872,512 total letters Query= NC_030458.1 Length=5016 Score E Sequences producing significant alignments: (Bits) Value seq44590 178 4e-41 seq23138 150 6e-33 seq10870 149 2e-32 seq52679 129 2e-26 seq53536 113 1e-21 seq42511 107 6e-20 seq41748 96.9 1e-16 seq39822 96.9 1e-16 >seq44590 Length=4521 Score = 178 bits (196), Expect = 4e-41 Identities = 495/754 (66%), Gaps = 28/754 (4%) Strand=Plus/Plus Query 3246 CTATAAATGACCTTCGAACTGCTTTTCAGATGCAGAGACTGAAGGAGCGTGACGCGCGTG 3305 |||| || || | || || || ||||| || || | || ||||||||||| || | Sbjct 2760 CTATTAACGATTTGCGTACCGCCTTTCAAATTCAAAAGTTGCTCGAGCGTGACGCTCGAG 2819 Query 3306 GTGGAACTCGTTATACCGAGATACTTCGCGCTCATTTTGGCGTTGTCTCTCCCGATAGTC 3365 |||| |||||||||| |||| | || | |||||||| || ||| ||| || Sbjct 2820 GTGGCACTCGTTATATCGAGCTTATTTTGTCGCATTTTGGTGTGCGTTCTGATGATGCTC 2879 Query 3366 GACTTCAGCGTCCTGAGTATCTTGGTGGCGGTGAGATACCGCTCATTGTCTCGTCTGTTC 3425 | | || || || |||||||||||||||||| || | | | | | || || Sbjct 2880 GTTTGCAACGGCCCGAGTATCTTGGTGGCGGTACGAATCGGATTAACCTTAATCCTATTG 2939 Query 3426 CGCAGACTTCGTCTTCGGACGCTACTACTCCGCAGGGAAACCTTGCCGCCTACTCTGTGT 3485 | ||| || | || || || ||| ||||| || |||||||| ||| Sbjct 2940 CTGCGACCGCGACC---GATCCTTCTGTTCCCCAGGGCAATCTTGCCGC------TGTCG 2990 Query 3486 TTAGTGGTCGCAATACTTGCAGGTGGACTAAGTCGTTTGTCGAACACGGCGTTGTTATTG 3545 | ||||| |||| || | | | | ||||| ||| ||||||||| | || || | Sbjct 2991 GGACTGGTCTTAATAGTTCCCGTTTTTCGAAGTCCTTTCAGGAACACGGCTTCGTGATCG 3050 Query 3546 GTCTTTGCTCTGTTCGAGCCGACCTTGAATATCAGCAGGGTCTTAATCGGATGTGGTCGC 3605 ||||| || | || || || ||| ||||| | || || | ||| | ||||| | Sbjct 3051 GTCTTGTATCGGCGCGCGCAGATCTTACCTATCAACGTGGCGTTGAGCGGTTTTGGTCCC 3110 Query 3606 GTAGGACGCGCTATGACTTCTATTGGCCTGCCCTCGCAAATCTTGGTGAACAGGCCGTGC 3665 || ||| || ||||| || |||||||| ||||| | ||||||| |||||||| || | Sbjct 3111 GTGAGACCCGGTATGATTTTTATTGGCCGGCCCTGTCTCATCTTGGCGAACAGGCTGTTC 3170 Query 3666 TTAACAAAGAGATTTAT---GCCGATTCGACCGACGGCAAGGATGATGAGGTTTTTGGCT 3722 |||| || || |||||| |||| | | | | | ||||||||||||| || | Sbjct 3171 TTAATAAGGAAATTTATTGGGCCGGTGCTCCTGTTG------ATGATGAGGTTTTCGGTT 3224 Query 3723 ATCAAGAGAGGTGGAGCGAGTATCGCTATAAGCCCTCTATGATTACTGGCAAGCTGCGTT 3782 |||| ||| | | |||| || || |||||||| ||| ||||| || | | || Sbjct 3225 ATCAGGAGCGTTACGGCGAATACCGTTATAAGCCTTCTCGTATTACCGGTATTTTCAATT 3284 Query 3783 CTAATGACCCTCAGTCTCTCGATGTTTGGCATTTGGCTCAAAATTTCATCGAGCGTCCTA 3842 | || || | |||||||||||||||||||||| ||| | | |||| | || Sbjct 3285 CGGATTCATCTGCGCCTCTCGATGTTTGGCATTTGGCGCAAGAGT---TCGACTCTACTC 3341 Query 3843 CCCTCTCGT----CTGATTTCATTAAAGACGCTCCGCCTATTAAGCGTGTTTTGGCCGTG 3898 | || || | | ||||||| | || | |||||||||| | || || | || || Sbjct 3342 CGCT-TCTTAATGCATCTTTCATTGAGGAGGATCCGCCTATTGATCGCATTATCGCGGTT 3400 Query 3899 CAGGATGAACCCGAGTTCGTTTGCGAT-TTCCATTTCATTTGTAAATGTGCTCGTCCAAT 3957 | | ||||| | ||| | || ||| || || ||||| || |||| ||| || || Sbjct 3401 CCGTCCGAACCGCACTTCTTGTGTGATGTTTGGTTCGATTTG-AAGTGTGATCGCCCGAT 3459 Query 3958 GCCCGTGTATTCAGTCCCTGGTTTGATTGACCAT 3991 ||| || || || || || ||| | ||||| ||| Sbjct 3460 GCCGGTTTACTCCGTTCCCGGTCTTATTGATCAT 3493 Score = 93.3 bits (102), Expect = 1e-15 Identities = 130/179 (73%), Gaps = 10/179 (6%) Strand=Plus/Plus Query 2729 CTTCCTTTTCGTGCTTATAATCTGATTTGGAATGATTGGTATCGTGATGAAAATTTGCAG 2788 ||||||||||||||||| || || ||||||||||| |||||||| ||| ||||||||||| Sbjct 2339 CTTCCTTTTCGTGCTTACAAGCTTATTTGGAATGAATGGTATCGCGATCAAAATTTGCAG 2398 Query 2789 GCTTCGGTTGAGATTCCGCTTGG--CGATACTGATGAC---GGCACGGCCTATA---AAC 2840 | || ||| ||| | | || ||| || | | | ||| ||| ||| | Sbjct 2399 GACTCTGTTCCTATT--GATCGGTCGGATTCTAACGTCGTTGGCGTGGCTGATATTCCGC 2456 Query 2841 TTCTTCCTCGTGGCAAGAGACATGATTATTTTACTTCTTGTCTTCCTTGGGCTCAGAAG 2899 || | ||||| || ||| | ||||||||||| ||| |||| | || ||| |||| ||| Sbjct 2457 TTTTGCCTCGCGGGAAGCGGCATGATTATTTCACTAGTTGTTTGCCCTGGCCTCAAAAG 2515 >seq23138 Length=2236 Score = 150 bits (166), Expect = 6e-33 Identities = 277/401 (69%), Gaps = 15/401 (4%) Strand=Plus/Plus Query 3290 GAGCGTGACGCGCGTGGTGGAACTCGTTATACCGAGATACTTCGCGCTCATTTTGGCGTT 3349 || ||||||||||| || || || || || || || ||| || |||||||| || Sbjct 894 GAACGTGACGCGCGATCCGGCACACGGTACACTGAAATTATTCAAGCGCATTTTGGTGTG 953 Query 3350 GTCTCTCCCGATAGTCGACTTCAGCGTCCTGAGTATCTTGGTGGCGGTGAGATACCGCTC 3409 ||| || ||| | || || |||||||| || |||||||| || | | || Sbjct 954 ACCTCACCTGATGCGAGGCTACAACGTCCTGAATACCTTGGTGGAGGATCAACCCGTGTC 1013 Query 3410 ATTGTCTCGTCTGTTCCGCAGACTTCGTCTTCGGACGCTACTACTCCGCAGGGAAACCTT 3469 | ||| ||| ||||||| || ||||| ||| | || || || ||||| ||||| || ||| Sbjct 1014 AATGTTTCGCCTGTTCCTCAAACTTCTTCTACAGATGCGACCACTCCCCAGGGCAATCTT 1073 Query 3470 GCCGCCTACT---CTGT--GTTTAGTGGTCGCAATACTTGCAGGTGGACTAAGTCGTTTG 3524 || || | | |||| |||| | |||| || || | ||||||| || Sbjct 1074 GCTGCTTTCGGTACTGTCGGTTTCGA--TCGCCATGGTTTTA------CTAAGTCTTTCA 1125 Query 3525 TCGAACACGGCGTTGTTATTGGTCTTTGCTCTGTTCGAGCCGACCTTGAATATCAGCAGG 3584 ||||||||| | ||||| || | |||| ||||||| ||| |||||||| | Sbjct 1126 CCGAACACGGTCACATCATTGGAATTGCGTGTGTTAGAGCCGATCTTACCTATCAGCAAG 1185 Query 3585 GTCTTAATCGGATGTGGTCGCG-TAGGACGCGCTATGACTTCTATTGGCCTGCCCTCGCA 3643 | || || ||||||||||| || ||||| || ||||| || ||||||||||| || || Sbjct 1186 GACTAAACCGGATGTGGTCTCGCCAGGAC-CGGTATGATTTTTATTGGCCTGCACTTGCT 1244 Query 3644 AATCTTGGTGAACAGGCCGTGCTTAACAAAGAGATTTATGC 3684 | || || ||||| ||||| || || || || |||||||| Sbjct 1245 CACCTGGGCGAACAAGCCGTACTGAATAAGGAAATTTATGC 1285 >seq10870 Length=2260 Score = 149 bits (164), Expect = 2e-32 Identities = 353/525 (67%), Gaps = 24/525 (5%) Strand=Plus/Minus Query 3244 TACTATAAATGACCTTCGAACTGCTTTTCAGATGCAGAGACTGAAGGAGCGTGACGCGCG 3303 ||| || ||||| |||||| || || ||| | |||| | || || ||||| || || Sbjct 1461 TACCATTAATGAGCTTCGAGAAGCGTTCCAGGTTCAGAAAATGCTCGAACGTGATGCTCG 1402 Query 3304 TGGTGGAACTCGTTATACCGAGATACTTCGCGCTCATTTTGGCGTTGTCTCTCCCGATAG 3363 | ||| || | || || ||||| | | || ||||| || ||| || |||||| Sbjct 1401 TTCTGGTACCAGGTACACGGAGATTATCCAGGCCCATTTCGGTGTTACTTCGCCCGATGC 1342 Query 3364 TCGACTTCAGCGTCCTGAGTATCTTGGTGGCGGTGAGATACC--GCTCATTGTCTCGTCT 3421 || || ||||||||||| || || || || ||| | || | | | | | ||| | Sbjct 1341 GCGTCTCCAGCGTCCTGAATACCTGGGCGGTGGTTC--TTCCAGGATTAATATTTCGCCG 1284 Query 3422 GTTCCGCAGACTTCGTCTTCGGACGCTACTACTCCGCAGGGAAACCTTGCCGCCTA---C 3478 |||||||| || ||| |||| ||||| ||||| || || |||||||| | | | Sbjct 1283 GTTCCGCAAACGAGTTCTACGGATGCTACGACTCCTCAAGGCAACCTTGCTGGTTTTGGC 1224 Query 3479 TCTGT--GTTTAGTGGTCGCAATACTTGCAGGTGGACTAAGTCGTTTGTCGAACACGGCG 3536 |||| | || || |||| | | | | |||||||| || ||| || || Sbjct 1223 ACTGTTGGCTT--TGATCGCCA------CGGTTTTACTAAGTCTTTCACCGAGCATGGTC 1172 Query 3537 TTGTTATTGGTCTTTGCTCTGTTCGAGCCGACCTTGAATATCAGCAGGGTCTTAATCGGA 3596 | | ||||||||| | |||||| || ||||| |||||||| ||| | || || | Sbjct 1171 ATATCATTGGTCTTGCTTGTGTTCGGGCAGACCTGACTTATCAGCAAGGTTTGAACCGTA 1112 Query 3597 TGTGGTCGCGT-AGGACGCGCTATGACTTCTATTGGCCTGCCCTCGCAAATCTTGGTGAA 3655 ||||||| || |||| || ||||| ||||| ||||| || || || |||| ||||| Sbjct 1111 TGTGGTCCCGCCAGGAT-CGTTATGATTTCTACTGGCCCGCTCTTGCTCATCTGGGTGAG 1053 Query 3656 CAGGCCGTGCTTAACAAAGAGATTTATGCCGATTCGACCGACGGC-AAGGATGATGAGGT 3714 ||||| || | || || ||||||||||| | | ||| | | |||||||| || Sbjct 1052 CAGGCGGTATTGAATAAGGAGATTTATGC----GCAAGGTACGTCTACCGATGATGAAGT 997 Query 3715 TTTTGGCTATCAAGAGAGGTGGAGCGAGTATCGCTATAAGCCCTC 3759 || || ||||||||| ||| || || || |||||||| || Sbjct 996 GTTCGGTTATCAAGAGCGGTACGCTGAATACCGTTATAAGCCTTC 952 >seq52679 Length=1036 Score = 129 bits (142), Expect = 2e-26 Identities = 271/401 (68%), Gaps = 15/401 (4%) Strand=Plus/Plus Query 3290 GAGCGTGACGCGCGTGGTGGAACTCGTTATACCGAGATACTTCGCGCTCATTTTGGCGTT 3349 || ||||| ||||| || || || || || ||||| ||| |||||||| |||||| Sbjct 622 GAACGTGATGCGCGATCCGGTACACGCTACACTGAGATCATTCAAGCTCATTTCGGCGTT 681 Query 3350 GTCTCTCCCGATAGTCGACTTCAGCGTCCTGAGTATCTTGGTGGCGGTGAGATACCGCTC 3409 || || ||| | ||||| |||||||| || ||||| || || | | || Sbjct 682 ACTTCGCCGGATGCCAGGCTTCAACGTCCTGAATACCTTGGCGGAGGATCAACCCGTGTC 741 Query 3410 ATTGTCTCGTCTGTTCCGCAGACTTCGTCTTCGGACGCTACTACTCCGCAGGGAAACCTT 3469 | || | || || || || ||| | || ||||| || || ||||| |||||| Sbjct 742 AACGTTAATCCGGTGCCTCAAACAAGCTCTACAGATGCTACAACGCCACAGGGCAACCTT 801 Query 3470 GCCGCCT-----ACTCTGTGTTTAGTGGTCGCAATACTTGCAGGTGGACTAAGTCGTTTG 3524 || || | ||| | | || || ||| || | | ||||| || || Sbjct 802 GCGGCTTTTGGTACTGTTGGGTT--TGATCGTCATG------GCTTTACTAAATCCTTCA 853 Query 3525 TCGAACACGGCGTTGTTATTGGTCTTTGCTCTGTTCGAGCCGACCTTGAATATCAGCAGG 3584 || || || | |||| ||| || | ||||| ||||| || |||||||| | Sbjct 854 CAGAGCATGGACATATTATCGGTATTGCTTGCGTTCGGGCCGATCTGACCTATCAGCAAG 913 Query 3585 GTCTTAATCGGATGTGGTCGCGT-AGGACGCGCTATGACTTCTATTGGCCTGCCCTCGCA 3643 |||| || || |||||||| || ||||| ||||| ||||||||||||||||| ||||| Sbjct 914 GTCTCAACCGCATGTGGTCCCGCCAGGAC-CGCTACGACTTCTATTGGCCTGCACTCGCC 972 Query 3644 AATCTTGGTGAACAGGCCGTGCTTAACAAAGAGATTTATGC 3684 |||| || ||||||||||| |||||||| || |||||||| Sbjct 973 CATCTGGGCGAACAGGCCGTACTTAACAAGGAAATTTATGC 1013 >seq53536 Length=2242 Score = 113 bits (124), Expect = 1e-21 Identities = 358/544 (66%), Gaps = 26/544 (5%) Strand=Plus/Minus Query 3290 GAGCGTGACGCGCGTGGTGGAACTCGTTATACCGAGATACTTCGCGCTCATTTTGGCGTT 3349 ||||| || || || ||| || || ||||| || || ||| |||||||| || || Sbjct 1838 GAGCGCGATGCTCGGTCTGGTACACGATATACTGAAATTATTCAAGCTCATTTCGGTGTA 1779 Query 3350 GTCTCTCCCGATAGTCGACTTCAGCGTCCTGAGTATCTTGGTGGCGGTGAGATACCGCTC 3409 ||| |||||| || || || || || || || ||||| || || | | || Sbjct 1778 ACCTCACCCGATGCCCGTCTACAACGCCCCGAATACCTTGGAGGAGGATCCACCCGTGTC 1719 Query 3410 ATTGTCTCGTCTGTTCCGCAGACTTCGTCTTCGGACGCTACTACTCCGCAGGGAAACCTT 3469 | || || |||| || || || ||| | || ||||| || ||||| || ||||| Sbjct 1718 AACGTTTCTCCTGTACCTCAAACAAGCTCTACAGATGCTACAACGCCGCAAGGCAACCTC 1659 Query 3470 GCCGCCTA---CTCTGT--GTTTAGTGGTCGCAATACTTGCAGGTGGACTAAGTCGTTTG 3524 || || | | |||| |||| || |||| | | | | ||||| || || Sbjct 1658 GCTGCTTTTGGCACTGTCGGTTT--TGATCGCCA------CGGCTTCACTAAATCCTTCA 1607 Query 3525 TCGAACACGGCGTTGTTATTGGTCTTTGCTCT-GTTCGAGCCGACCTTGAATATCAGCAG 3583 || || || | |||| || | ||||| || || |||||||| |||||||| Sbjct 1606 CTGAGCATGGACATATTATCGG-CATTGCTTGCGTACGTGCCGACCTAACCTATCAGCAA 1548 Query 3584 GGTCTTAATCGGATGTGGTCGCGT-AGGACGCGCTATGACTTCTATTGGCCTGCCCTCGC 3642 ||||| || || |||||||| ||| ||||| || || || ||||||||||| || ||||| Sbjct 1547 GGTCTCAACCGTATGTGGTCCCGTCAGGAC-CGTTACGATTTCTATTGGCCCGCACTCGC 1489 Query 3643 AAATCTTGGTGAACAGGCCGTGCTTAACAAAGAGATTTATGCCGATTCGACCGACGGCA- 3701 | || |||||||| || || || || || || |||||||| | | || || Sbjct 1488 TCACCTGGGTGAACAAGCGGTACTCAATAAGGAAATTTATGC----GCAAGGCACATCAG 1433 Query 3702 AGGATGATGAGGTTTTTGGCTATCAAGAGAGGTGGAGCGAGTATCGCTATAAGCCCTCTA 3761 | ||||| || ||||| ||||| || || | | ||| || || ||||| || || Sbjct 1432 AAGATGACGATGTTTTCGGCTACCAGGAACGATACGCCGAATACCGATATAAACCGTCAC 1373 Query 3762 TGATTACTGGCAAGC--TGCGTTCTAATGACCCTCAGTCTCTCGATGTTTGGCATTTGGC 3819 | ||||| || ||| | || || || | | ||| ||||| ||||||||| | Sbjct 1372 TTATTACAGG--AGCCTTCCGATCAAACGCGGCAACGTCCCTCGACACCTGGCATTTGTC 1315 Query 3820 TCAA 3823 |||| Sbjct 1314 TCAA 1311 >seq42511 Length=5077 Score = 107 bits (118), Expect = 6e-20 Identities = 113/146 (77%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 3540 TTATTGGTCTTTGCTCTGTTCGAGCCGACCTTGAATATCAGCAGGGTCTTAATCGGATGT 3599 |||||||| || | ||||| |||||||| ||||| |||||||||||||| |||| Sbjct 4454 TTATTGGTATTGCTTGCGTTCGGGCCGACCTAACTTATCAACAGGGTCTTAATCGCATGT 4395 Query 3600 GGTCGCGT-AGGACGCGCTATGACTTCTATTGGCCTGCCCTCGCAAATCTTGGTGAACAG 3658 |||| || | || |||||||| || || |||||||| || || | ||||||||||| Sbjct 4394 GGTCCCGCCAAGAT-CGCTATGATTTTTACTGGCCTGCACTTGCTCACCTTGGTGAACAA 4336 Query 3659 GCCGTGCTTAACAAAGAGATTTATGC 3684 || || || || ||||| |||||||| Sbjct 4335 GCTGTACTCAATAAAGAAATTTATGC 4310 >seq41748 Length=1537 Score = 96.9 bits (106), Expect = 1e-16 Identities = 110/145 (76%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 3540 TTATTGGTCTTTGCTCTGTTCGAGCCGACCTTGAATATCAGCAGGGTCTTAATCGGATGT 3599 |||| ||| || || ||||| ||||| || |||||||| || || || || |||| Sbjct 1519 TTATCGGTATTGCCTGCGTTCGTGCCGATCTGACGTATCAGCAAGGACTAAACCGTATGT 1460 Query 3600 GGTCGCGT-AGGACGCGCTATGACTTCTATTGGCCTGCCCTCGCAAATCTTGGTGAACAG 3658 |||| ||| |||| |||||||| || ||||||||||| ||||| | || || ||||| Sbjct 1459 GGTCCCGTCAGGAT-CGCTATGATTTTTATTGGCCTGCACTCGCTCACCTGGGCGAACAA 1401 Query 3659 GCCGTGCTTAACAAAGAGATTTATG 3683 || ||| | || || |||||||||| Sbjct 1400 GCTGTGTTGAATAAGGAGATTTATG 1376 >seq39822 Length=5133 Score = 96.9 bits (106), Expect = 1e-16 Identities = 254/383 (66%), Gaps = 10/383 (3%) Strand=Plus/Plus Query 2416 TCTTGTTCCTGTGTTCTGTGATGAAGTTTTGCCCTCTGATACATTCAAGTTTGACATGAG 2475 |||||| ||||| || |||||||||||||||| ||||| || || || | | | Sbjct 2017 TCTTGTGCCTGTTTTTGTTGATGAAGTTTTGCCCGGGGATACTTTTAAAGTTAATCTTAC 2076 Query 2476 TGCGTTTGCTCGTCTCACTACTCAGGTTGTGCCGACGATGAGCAATGTCTACATGGAT-- 2533 || ||||||||||| |||||| | | || | ||| ||| | | |||||| Sbjct 2077 TGGTTTTGCTCGTCTTGCTACTCCCACTTTCCCTATAATGGATAATATGTTTATGGATAC 2136 Query 2534 TTTCAGTTTTTCTTTGTTCCCTACCGTCTTGTTTGGGAGCATTGGAATAATTTCATGGGT 2593 ||| ||||| ||||| || ||||||||||||| ||||| | || || || Sbjct 2137 CTTC--TTTTTTGCGGTTCCGTATCGTCTTGTTTGGGGTAATTGGCAGAAGTTTTGTGGA 2194 Query 2594 GAACAGGATAACCCTAGCGATAGCACTGATTTTCTCGTCCCGCAGATTACGAAGGAACTT 2653 || |||| ||| ||| | ||||| | ||||| ||||| || | || || | Sbjct 2195 GAGCAGGTTAATCCTGGGGATAGTATTGATTACACTGTCCC---TATAATTAATGATTTC 2251 Query 2654 ACAACTTCCCTTAATGGCACTATTTGGGATTACTTCGGACTTCCCA-CAAG--TGGTGGT 2710 | | | | ||||| | | |||||||| || |||||||| | | || || || Sbjct 2252 AATAATGCTGGTAATGAATCATTATGGGATTATTTTGGACTTCCTACCCAGGTTGCTGAA 2311 Query 2711 TCGCAAAAGTTTTCTGCTCTTCCTTTTCGTGCTTATAATCTGATTTGGAATGATTGGTAT 2770 | || || ||||||| | || ||||||||||| || | ||||| |||| | Sbjct 2312 GATCTTGAGATTAATGCTCTTGTTCCCCGGGCTTATAATCTTATATACAATGAATGGTTT 2371 Query 2771 CGTGATGAAAATTTGCAGGCTTC 2793 |||||| |||||||||| | ||| Sbjct 2372 CGTGATCAAAATTTGCAAGATTC 2394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15928489903610