Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17] 6,899 sequences; 494,890,867 total letters Query= NC_001330.1 Length=6087 Score E Sequences producing significant alignments: (Bits) Value seq5881 883 0.0 >seq5881 Length=5481 Score = 883 bits (978), Expect = 0.0 Identities = 1308/1849 (71%), Gaps = 71/1849 (4%) Strand=Plus/Minus Query 2560 CAGGCTAGTGCTGTTTTGGATGTTACTGAGGAAGATTTCGATTTTCTGACTGGTGATAAG 2619 |||||| ||| ||||||||| | || || || ||||||||||||||||| || | || Sbjct 3544 CAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACAAA 3485 Query 2620 ATTTGGATTGCTACCGACCGTAACCGTGCGCGTCGTTGTGTTGAGGCTTGTGTTTATGGA 2679 ||||||||||||| ||||| ||||| ||||| || ||||||||||| |||||||| Sbjct 3484 GTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATGGT 3425 Query 2680 ACGCTGGACTTTGTTGGATATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 2739 |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 3424 ACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 3365 Query 2740 ATTGCTTATTATGTTCATCCCGTCAATGTACAAACAGCATGCCTCGTTATGGAAGGCGCG 2799 |||||||||||||||||||||||||| | ||||| || || ||| | ||||||||||| Sbjct 3364 ATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCT 3305 Query 2800 GAGTTTAGCGAAAACATTATCAATGGCGTCGAGCGCCCGGTTAACGCCGCTGAGCTCTTC 2859 || |||| ||||||||||| |||||||||||||| |||||||| |||||||| | ||| Sbjct 3304 GAATTTACGGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGTTC 3245 Query 2860 GCGTACACCCTGCGTATTAAAGCAGGATTCAAAGAAACTGTAATGGATGCCGAGGAAAAT 2919 |||| ||| ||||| | |||||| || || | | | || || || ||||| Sbjct 3244 GCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGACGCAGAAGAAAAC 3185 Query 2920 GCTCGTCAGAAATTACGCGCAAATGGACTGAAGTGATATG--AAG--AAAGCACGT---- 2971 | ||||| |||||||| ||| | ||| ||| || || | ||| ||| |||| Sbjct 3184 GTGCGTCAAAAATTACGTGCAGAAGGAGTGATGTAATGTCTAAAGGTAAAAAACGTTCTG 3125 Query 2972 -CGTTCTCC-TAGTCGTC------------------------------GTAAAGGTGCTC 2999 || || || | |||||| ||||||| |||| Sbjct 3124 GCGCTCGCCCTGGTCGTCCGCAGCCGTTGCGAGGTACTAAAGGCAAGCGTAAAGGCGCTC 3065 Query 3000 GCCTCTGGTATGTAGGCGGTTCTCAGTTTTAATTATGGGCCCTTCGGGGCCTT--TTAAG 3057 | || ||||||||||| ||| || |||||||| || |||||| |||| || || Sbjct 3064 GTCTTTGGTATGTAGGTGGTCAACAATTTTAATTGCAGGGGCTTCGGCCCCTTACTTGAG 3005 Query 3058 GA--AATTCAAATGTCTAATGTACAAACTTCCGCTGAACGTGAAATTGTTGACCTCTCTC 3115 || |||| ||||||||| | |||||| ||| || ||| |||||| || | Sbjct 3004 GATAAATT---ATGTCTAATATTCAAACTGGCGCCGAGCGTATGCCGCATGACCTTTCCC 2948 Query 3116 ATCTTGCCTT--TGACTGTGGCATGCTTGGTCGTCTGAAGACTGTTTCATGGACTCCTGT 3173 |||||| ||| | ||| | || | |||||||||| | || ||||| ||||| || Sbjct 2947 ATCTTGGCTTCCTTGCTG-GTCA-GATTGGTCGTCTTATTACCATTTCAACTACTCCGGT 2890 Query 3174 TATCGCTGGCGATTCCTTTGAGCTTGATGCTGTTGGTGCTTTGCGTCTTTCCCCTCTGCG 3233 |||||||||||| ||||| ||| | || || ||||| ||| | |||||||| || |||| Sbjct 2889 TATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTTTCTCCATTGCG 2830 Query 3234 TCGTGGTTTAGCTATTGATTCTAAGGTTGATTTTTTCACCTTCTACATTCCGCATCGTCA 3293 |||||| | |||||||| |||| || || |||| || || || | || |||||||| Sbjct 2829 TCGTGGCCTTGCTATTGACTCTACTGTAGACATTTTTACTTTTTATGTCCCTCATCGTCA 2770 Query 3294 TGTTTATGGCGACCAGTGGATTCAGTTTATGCGTGATGGTGTTAATGCTCAGCCTCTGCC 3353 |||||||| || ||||||||| |||| ||| |||||||||||||| ||||| || Sbjct 2769 CGTTTATGGTGAACAGTGGATTAAGTTCATGAAGGATGGTGTTAATGCCACTCCTCTCCC 2710 Query 3354 TTCTGTTACTTGCAATCGCTATCCGGACCATGCTGGTTATGTAGGTACTATTGTTCCTG- 3412 |||||| | | | ||| |||||||| | || | | || || ||| |||| Sbjct 2709 GACTGTTAACACTACTGGTTATATTGACCATGCCGCTTTTCTTGGCACGATTAACCCTGA 2650 Query 3413 --CAAATAACCGTATTCCTAAGTTTTTGCATCAGAGCTATCTGAACATTTACAATAACTA 3470 | ||||| || |||||| |||| |||| | ||| |||| || || || ||||| Sbjct 2649 TACCAATAAA---ATCCCTAAGCATTTGTTTCAGGGTTATTTGAATATCTATAACAACTA 2593 Query 3471 TTTCCGTGCCCCGTGGATGCCTGAGCGTACCGAGGCCAACCCGTCTAATCTTAATGAGGA 3530 ||| || |||||||||||||| ||||||||||| ||||| | | |||||| | || Sbjct 2592 TTTTAAAGCGCCGTGGATGCCTGACCGTACCGAGGCTAACCCTAATGAGCTTAATCAAGA 2533 Query 3531 TGATGCTCGTTATCGCTTCCGTTGCTGCCACCTTAAAAATATTTGGTCTGCTCCGCTGCC 3590 ||||||||||||| | |||||||||||||| || ||||| |||||| |||||||||| || Sbjct 2532 TGATGCTCGTTATGGTTTCCGTTGCTGCCATCTCAAAAACATTTGGACTGCTCCGCTTCC 2473 Query 3591 TCCGGAAACCAAATTGGCTGAAGAAATGGGTATTGAAAGCAATTCCATTGATATTATGGG 3650 ||| || || | | || ||||| | | | || || ||||| |||||||| Sbjct 2472 TCCTGAGACTGAGCTTTCTCGCCAAATGACGACTTCTACCACATCTATTGACATTATGGG 2413 Query 3651 TTTGCAAGCCGCTTATGCGCAGCTTCACACTGAGCAGGAGCGTACTTACTTTATGCAGCG 3710 | ||||||| |||||||| | | || ||||| || || ||| |||||| |||||||| Sbjct 2412 TCTGCAAGCTGCTTATGCTAATTTGCATACTGACCAAGAACGTGATTACTTCATGCAGCG 2353 Query 3711 TTACCGTGATGTTATCTCCAGCTTTGGCGGTTCAACCTCCTATGATGCCGATAACCGACC 3770 ||||| ||||||||| || ||||| ||| |||||| ||||| || || ||||| || Sbjct 2352 TTACCATGATGTTATTTCTTCATTTGGAGGTAAAACCTCTTATGACGCTGACAACCGTCC 2293 Query 3771 GTTGCTTGTTATGCACACCGACTTCTGGGCTTCCGGTTACGACGTTGACGGTACCGACCA 3830 || ||||| |||| | | | ||||||| || || || || ||||| || || ||||| Sbjct 2292 TTTACTTGTCATGCGCTCTAATCTCTGGGCATCTGGCTATGATGTTGATGGAACTGACCA 2233 Query 3831 ATCTTCCCTTGGACAATTCTCTGGTCGAGTCCAGCAGACGTTTAAACACTCAGTGCCGCG 3890 | | || | || || || |||||||| || || ||||| | |||||| || |||||||| Sbjct 2232 AACGTCGTTAGGCCAGTTTTCTGGTCGTGTTCAACAGACCTATAAACATTCTGTGCCGCG 2173 Query 3891 ATTCTTCGTGCCTGAGCATGGTGTCATGATGACTTTGGCTCTGATTCGCTTCCCGCCTAT 3950 ||||| || ||||||||||| ||| | ||| | || || |||| || ||||||| Sbjct 2172 TTTCTTTGTTCCTGAGCATGGCACTATGTTTACTCTTGCGCTTGTTCGTTTTCCGCCTAC 2113 Query 3951 CAGTCCGTTGGAGCACCATTATCTTGCTGGTAAGTCTCAGTTAACCTATACCGACCTTGC 4010 | ||| || || ||| | ||| | || || |||||||| |||| Sbjct 2112 TGCGACTAAAGAGATTCAGTACCTTAACGCTAAAGGTGCTTTGACTTATACCGATATTGC 2053 Query 4011 TGGCGACCCGGCTCTGATTGGTAACTTGCCTCCTCGCGAGATTAGTTATCGA-GATCTGT 4069 ||||||||| | | || ||| |||||||| || || || ||| ||| | ||| | | Sbjct 2052 TGGCGACCCTGTTTTGTATGGCAACTTGCCGCCGCGTGAAATT-TCTATGAAGGATGTTT 1994 Query 4070 TCCGTGATGGTCGTTCTGGTATTAAGATTAAAGTTGCCGAGTCTATTTGGTATCGTACTC 4129 ||||| |||| ||| || ||| |||| |||| ||| | ||||||||| | Sbjct 1993 TCCGTTCTGGTGATTCGTCTAAGAAGTTTAAGATTGCTGAGGGTCAGTGGTATCGTTATG 1934 Query 4130 ATCCTGATTACGTTAACTTTAAGTATCATGATTTGCATGGATTCCCGTTCCTTGATGATG 4189 ||| || ||| | ||||| | | | || ||||| ||| || | || Sbjct 1933 CGCCTTCGTATGTTTCTCCTGCTTATCACCTTCTTGAAGGCTTCCCATTCATTCAGGAAC 1874 Query 4190 CGCCTGGTACATCTACTGGTGATAATCTTCAGGAAGCTATCCTTGTTCGTCATCAGGACT 4249 ||| || |||||| || | || ||| | ||| |||| || || || | Sbjct 1873 CGC---------CTTCTGGTG---ATTTGCAAGAACGCGTACTTATTCGCCACCATGATT 1826 Query 4250 ATGATGCTTGCTTCCAGTCTCAGCAGTTGCTACAGTGGAACAAACAGGCTCGCTATAACG 4309 |||| || |||||||| |||||| | |||||||| | |||| | | ||| | Sbjct 1825 ATGACCAGTGTTTCCAGTCCGTTCAGTTGTTGCAGTGGAATAGTCAGGTTAAATTTAATG 1766 Query 4310 TTAGTGTTTATCGCCATATGCCTACTGTACGTGATTCCATTATGACCTC 4358 | | ||||||||| || |||| || || ||||| || ||||| || Sbjct 1765 TGACCGTTTATCGCAATCTGCCGACCACTCGCGATTCAATCATGACTTC 1717 Score = 174 bits (192), Expect = 6e-40 Identities = 280/398 (70%), Gaps = 6/398 (2%) Strand=Plus/Minus Query 1293 GGCTGGTTCTTCGTATTTGATACGTTAACCCTTGCTGATGACCGTTTGCAGGCTTTTAAT 1352 || ||||| |||| ||||| || | || | ||||| ||||| || |||| ||| || Sbjct 4820 GGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATTAGAGGCGTTTTAT 4761 Query 1353 GAAAACCCCAATGCTCTTCGTGATTATTTCAGGACTGTTGGTCGAGCTGTTCTGCGCGCT 1412 || || ||||||||| | ||||| ||||| | | ||||||| ||||| || Sbjct 4760 GATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCC 4701 Query 1413 GAAGGTCGTTCGGTCAAGGATTCCTACAACGACTGCTATCGCTATCTTTGTGTGCCGGAG 1472 || ||||| || || ||||| || ||||||||||| ||| |||||||||| ||| Sbjct 4700 GAGGGTCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAG 4641 Query 1473 TTTGGAGGTCAGC--ACGGCCGTCTTCATTGGCACGTTGTGCATATGGTGCGGACTCTTC 1530 | || | |||| | ||||||||||||| || | ||||| | ||||||| |||| Sbjct 4640 TATG--GTACAGCTAATGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCGGACACTTC 4583 Query 1531 CTTTGGGAAGTCATGACCCTAATTTCGGTCGCAAGGTACGTAATTATCGCCAGATTAACT 1590 || || || |||||||||||| ||||| |||||| ||| |||||| |||| | Sbjct 4582 CTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCAG-TTAAAT 4524 Query 1591 CG-TTCCGTGGCATGTGGCCTTATGGCTTCACGCAACCGATAGCTGTTCGCTATCAACAT 1649 | || | | |||||||||||| | || || || || |||||||| || Sbjct 4523 AGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGCCCATCGCAGTTCGCTACACGCAG 4464 Query 1650 GACGCTTATTCCCGCAAAGGTTGGCTGTGGCCTGTTGA 1687 ||||||| ||| || |||||| ||||||||||||| Sbjct 4463 GACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGA 4426 Score = 82.4 bits (90), Expect = 3e-12 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 5648 AGATTGCTGGTATTCAGTCTGCCACTTCTCGTCAAAATACGAAGGATTCTGTTTATGCCC 5707 |||||||||| |||||||| || ||||| || || |||||||| || || ||||| | Sbjct 543 AGATTGCTGGCATTCAGTCGGCGACTTCACGCCAGAATACGAAAGACCAGGTATATGCAC 484 Query 5708 AGAATGAGATGCTTCAGTATAATCAACGTGAGTCGCAGGCACGCGTTGCGTCTAT 5762 | |||||||||||| ||| | || ||||| || |||||||||||||| Sbjct 483 AAAATGAGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCGCGTTGCGTCTAT 429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19361697149436