Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17]
6,899 sequences; 494,890,867 total letters
Query= NC_012868.1
Length=6094
Score E
Sequences producing significant alignments: (Bits) Value
seq5881 949 0.0
>seq5881
Length=5481
Score = 949 bits (1052), Expect = 0.0
Identities = 1330/1857 (72%), Gaps = 73/1857 (4%)
Strand=Plus/Minus
Query 2557 TTCAGGCTAGCGCTGTTCTGGATATCACTGAGGAAGATTTCGACTTCCTGACTGGTGATA 2616
|||||||| || ||| ||||| | || || || |||||||| || ||||| || | |
Sbjct 3546 TTCAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACA 3487
Query 2617 AGATTTGGATTGCCACCGACCGCAACCGTGCGCGTCGCTGTGTGGAGGCTTGTGTTTATG 2676
| |||||||||| || |||||| ||||| |||||||| || |||||||| |||||||
Sbjct 3486 AAGTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATG 3427
Query 2677 GAGCGCTGGACTTTGTCGGCTATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG 2736
| ||||||||||||| || || |||||||||||||||||||||||||||||||||||||
Sbjct 3426 GTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG 3367
Query 2737 TCATTGCTTATTATGTTCATCCCGTCAACATTCAGACAGCATGCCTCGTTATGGAAGGCG 2796
|||||||||||||||||||||||||||||||||| || || || ||| | ||||||||||
Sbjct 3366 TCATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCG 3307
Query 2797 CGGAGTTTAGCGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAACGCCGCTGAGCTCT 2856
| || |||| ||||||||||||||||||||||||||||||||||| |||||||| | |
Sbjct 3306 CTGAATTTACGGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGT 3247
Query 2857 TCGCGTACACCCTGCGTATTAAGGCAGGATTCAAAGAAACTGTAATTGATGCCGAGGAAA 2916
|||||| ||| ||||| | |||||| || || | | | ||| || || ||||
Sbjct 3246 TCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGACGCAGAAGAAA 3187
Query 2917 ATGCTCGTCAGAAATTACGCGCAAATGGACTGA---AATGATATGAAG--AAAGCACGT- 2970
| | ||||| |||||||| ||| | ||| ||| |||| | | ||| ||| ||||
Sbjct 3186 ACGTGCGTCAAAAATTACGTGCAGAAGGAGTGATGTAATG-TCTAAAGGTAAAAAACGTT 3128
Query 2971 ----CGTTCTCC-TAGTCGTC------------------------------GTAAAGGTG 2995
|| || || | |||||| ||||||| |
Sbjct 3127 CTGGCGCTCGCCCTGGTCGTCCGCAGCCGTTGCGAGGTACTAAAGGCAAGCGTAAAGGCG 3068
Query 2996 CCCGCCTTTGGTATGTAGGCGGTTCTCAGTTTTAATTATGAGCCCTTCGGGGCTCT--TT 3053
| || |||||||||||||| ||| || |||||||| | |||||| | | ||
Sbjct 3067 CTCGTCTTTGGTATGTAGGTGGTCAACAATTTTAATTGCAGGGGCTTCGGCCCCTTACTT 3008
Query 3054 AAGGA-AAATTAAATGTCTAATGTACAAACTTCCGCTGAACGTGAAATTGTTGACCTTTC 3112
|||| |||||| |||||||| | |||||| ||| || ||| |||||||||
Sbjct 3007 GAGGATAAATTA--TGTCTAATATTCAAACTGGCGCCGAGCGTATGCCGCATGACCTTTC 2950
Query 3113 TCATCTTGCCTT--TGACTGTGGCATGATTGGTCGTTTGAAAACTGTTTCATGGACTCCT 3170
||||||| ||| | ||| | || |||||||||| | | || ||||| |||||
Sbjct 2949 CCATCTTGGCTTCCTTGCTG-GTCA-GATTGGTCGTCTTATTACCATTTCAACTACTCCG 2892
Query 3171 GTTATTGCTGGCGATTCCTTTGAGCTTGATGCTGTTGGCGCTTTGCGTCTTTCTCCTCTG 3230
||||| |||||||| ||||| ||| | || || ||||||||| | ||||||||||| ||
Sbjct 2891 GTTATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTTTCTCCATTG 2832
Query 3231 CGTCGTGGTTTAGCTATTGACTCTAAGGTTGATTTTTTCACTTTCTATATTCCGCATCGC 3290
|||||||| | ||||||||||||| || || |||| ||||| ||| | || |||||
Sbjct 2831 CGTCGTGGCCTTGCTATTGACTCTACTGTAGACATTTTTACTTTTTATGTCCCTCATCGT 2772
Query 3291 CATGTTTATGGTGACCAGTGGATTCAATTTATGCGTGATGGTGTTGATGCCGCACCACTC 3350
|| ||||||||||| ||||||||| | || ||| ||||||||| ||||| | || |||
Sbjct 2771 CACGTTTATGGTGAACAGTGGATTAAGTTCATGAAGGATGGTGTTAATGCCACTCCTCTC 2712
Query 3351 CCTTCCGTTACTACTACTCAGTATCCGGATGACGCTGGTTATGTTGGTACTATTGTTCCT 3410
|| | |||| |||||| ||| || | || | || | |||| || ||| |||
Sbjct 2711 CCGACTGTTAACACTACTGGTTATATTGACCATGCCGCTTTTCTTGGCACGATTAACCCT 2652
Query 3411 AAGAGCAACCGTATTCCTAAGTTTTTGCATCAGTCTTATCTGAATATTTATAATAACTAT 3470
| | ||| || |||||| |||| |||| |||| ||||||| ||||| ||||||
Sbjct 2651 GATACCAATAAAATCCCTAAGCATTTGTTTCAGGGTTATTTGAATATCTATAACAACTAT 2592
Query 3471 TTCCGTGCGCCGTGGATGCCTGAGCGTACTGAAGCTAATCCTTCAAAT----TTAGACCG 3526
|| ||||||||||||||||| ||||| || ||||| ||| ||| ||| | |
Sbjct 2591 TTTAAAGCGCCGTGGATGCCTGACCGTACCGAGGCTAACCCT---AATGAGCTTA-ATCA 2536
Query 3527 TGATGATTCTCGCTATGGATTCCGTTGCTGCCATCTTAAAACTATTTGGTCTGCTCCTCT 3586
|||||| |||| ||||| ||||||||||||||||| |||| |||||| ||||||| ||
Sbjct 2535 AGATGATGCTCGTTATGGTTTCCGTTGCTGCCATCTCAAAAACATTTGGACTGCTCCGCT 2476
Query 3587 TCCTCCGGAAACTAAGCTCGCTGAGCAAATGGGCATTGAAAGCAATTCCATTGATATTAT 3646
|||||| || ||| |||| || |||||| | | | || || ||||| |||||
Sbjct 2475 TCCTCCTGAGACTGAGCTTTCTCGCCAAATGACGACTTCTACCACATCTATTGACATTAT 2416
Query 3647 GGGTTTGCAGGCCGCTTATGCGCAGCTTCATACTGAGCAGGAGCGTACTTATTTCATGCA 3706
|||| |||| || |||||||| | | |||||||| || || ||| ||| ||||||||
Sbjct 2415 GGGTCTGCAAGCTGCTTATGCTAATTTGCATACTGACCAAGAACGTGATTACTTCATGCA 2356
Query 3707 GCGTTATCGTGATGTTATCTCCAGCTTTGGCGGTTCAACCTCCTATGATGCCGATAACCG 3766
|||||| | ||||||||| || ||||| ||| |||||| ||||| || || |||||
Sbjct 2355 GCGTTACCATGATGTTATTTCTTCATTTGGAGGTAAAACCTCTTATGACGCTGACAACCG 2296
Query 3767 ACCGTTGCTTGTTATGCACACCGATTTCTGGGCTTCCGGTTACGACGTTGACGGTACCGA 3826
|| || ||||| |||| | | || ||||||| || || || || ||||| || || ||
Sbjct 2295 TCCTTTACTTGTCATGCGCTCTAATCTCTGGGCATCTGGCTATGATGTTGATGGAACTGA 2236
Query 3827 CCAATCTTCCCTCGGACAGTTTTCGGGTCGAGTCCAACAGACGTTTAAACACTCAGTGCC 3886
|||| | || | || |||||||| ||||| || |||||||| | |||||| || |||||
Sbjct 2235 CCAAACGTCGTTAGGCCAGTTTTCTGGTCGTGTTCAACAGACCTATAAACATTCTGTGCC 2176
Query 3887 TCGATTCTTCGTGCCGGAGCATGGTGTCATGATGACTTTGATGCTGGTTCGCTTCCCGCC 3946
|| ||||| || || |||||||| ||| | ||| | ||| ||||| || |||||
Sbjct 2175 GCGTTTCTTTGTTCCTGAGCATGGCACTATGTTTACTCTTGCGCTTGTTCGTTTTCCGCC 2116
Query 3947 TATCAGTCCTTTGGAGCATCATTATCTTGTTGGTCGTAATAATTTGACTTATACCGACCT 4006
|| || ||| ||| || ||| | | | ||||||||||||||| |
Sbjct 2115 TACTGCGACTAAAGAGATTCAGTACCTTAACGCTAAAGGTGCTTTGACTTATACCGATAT 2056
Query 4007 TGCGGGTGACCCGGCTTTGATTGGTAATTTGCCGCCACGTGAGATTTCTTATCAGGATCT 4066
||| || ||||| | |||| ||| || |||||||| ||||| |||||| ||||| |
Sbjct 2055 TGCTGGCGACCCTGTTTTGTATGGCAACTTGCCGCCGCGTGAAATTTCTATGAAGGATGT 1996
Query 4067 TTTCCGTGATGGTCGTCCGGGCATTAAGATTAAGGTTGCCGAGTCTATCTGGTATCGTAC 4126
||||||| |||| | || | ||| ||||| |||| ||| | |||||||||
Sbjct 1995 TTTCCGTTCTGGTGATTCGTCTAAGAAGTTTAAGATTGCTGAGGGTCAGTGGTATCGTTA 1936
Query 4127 TCATCCGGATTATGTTAACTAC-AAGTATCAGTTACTTGAAGGTTTTCCGTTCCTTGATG 4185
| || |||||| || | ||||| | |||||||| || || ||| || | |
Sbjct 1935 TGCGCCTTCGTATGTT-TCTCCTGCTTATCACCTTCTTGAAGGCTTCCCATTCATTCAGG 1877
Query 4186 ATGCGCCCGGTACGACTAGTGGTGATGACCTTCAGAAGGCTATTCTCATTGACCATAATG 4245
| ||| || ||||||| | |||| || | || ||| ||| |||
Sbjct 1876 AACCGC---------CTTCTGGTGATTTGC--AAGAACGC-GTACTTATTCGCCACCATG 1829
Query 4246 ACTATAATGCCTGTTTCCAGTCTCAGCAGTTGCTTCAGTGGAATAATCAGGCTCGTTATA 4305
| ||| | ||||||||||| |||||| | |||||||||| ||||| | | ||
Sbjct 1828 ATTATGACCAGTGTTTCCAGTCCGTTCAGTTGTTGCAGTGGAATAGTCAGGTTAAATTTA 1769
Query 4306 ATGTCAATGTTTATCGTCATATTCCTACTGTTCGTGATTCTATTATGACCTCTTGAT 4362
|||| | |||||||| || | || || ||| ||||| || ||||| || ||||
Sbjct 1768 ATGTGACCGTTTATCGCAATCTGCCGACCACTCGCGATTCAATCATGACTTCGTGAT 1712
Score = 178 bits (196), Expect = 5e-41
Identities = 281/398 (71%), Gaps = 6/398 (2%)
Strand=Plus/Minus
Query 1292 GGCTGGTTCTTTGTATTTGATACACTGACCCTTGCTGATGACCGTTTGCAGGCTTTTAAT 1351
|| ||||| | || ||||| || || || | ||||| ||||| || |||| ||| ||
Sbjct 4820 GGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATTAGAGGCGTTTTAT 4761
Query 1352 GAAAACCCCAATGCTCTTCGTGATTATTTTAGGACTGTTGGTCGAGCTGTTCTGCGCGCT 1411
|| || ||||||||| | ||||| |||||| | | ||||||| ||||| ||
Sbjct 4760 GATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCC 4701
Query 1412 GAAGGTCGTTCGGTTAAGGATTCCTACAACGACTGCTATCGTTATCTTTGTGTGCCGGAG 1471
|| ||||| || ||| ||||| || ||||||||||| ||| |||||||||| |||
Sbjct 4700 GAGGGTCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAG 4641
Query 1472 TTTGGAGGTCAGC--ACGGCCGTCTTCATTGGCACGTTGTGCATATGGTGCGGACTCTTC 1529
| || | |||| | ||||||||||||| || | ||||| | ||||||| ||||
Sbjct 4640 TATG--GTACAGCTAATGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCGGACACTTC 4583
Query 1530 CTTTGGGAAGTCACGACCCTAATTTCGGTCGCAAGGTACGTAATTATCGCCAGATTAACT 1589
|| || || ||||||||||| ||||| |||||| ||| |||||| |||| |
Sbjct 4582 CTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCAG-TTAAAT 4524
Query 1590 CG-TTCCGTGGCATGTGGCCCTATGGCTTCACGCAACCGATAGCTGTTCGCTATCAACAT 1648
| || | | |||||| ||||| | || || || || |||||||| ||
Sbjct 4523 AGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGCCCATCGCAGTTCGCTACACGCAG 4464
Query 1649 GACGCTTATTCTCGTAAAGGTTGGCTGTGGCCTGTTGA 1686
||||||| ||| ||| |||||| |||||||||||||
Sbjct 4463 GACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGA 4426
Score = 174 bits (192), Expect = 6e-40
Identities = 226/307 (74%), Gaps = 14/307 (5%)
Strand=Plus/Minus
Query 5469 AGGAAAGGCAACCCGTGATTACTTGGCAGCGGCTTTCCCTGAGCTCAACCCATGGGAACG 5528
|||||||| || |||||||| | || || || || |||||||| || | ||||| ||
Sbjct 728 AGGAAAGGATACTCGTGATTATCTTGCTGCTGCATTTCCTGAGCTTAATGCTTGGGAGCG 669
Query 5529 TGCTGGAGCTGATGCTTCCACTGCCGGGTTAGAGTCTTCCGC------TCAGAATCAACA 5582
|||||| |||||||||||| |||| || || || | ||| | ||||||||
Sbjct 668 TGCTGGTGCTGATGCTTCCTCTGCTGG--TATGGT-TGACGCCGGATTTGAGAATCAA-- 614
Query 5583 AAAAGAGATGCTTAAAATGCAACTGGATAACCAGAAGGATATTGCCAAGATGCAGA-TGA 5641
|||||| | ||||||||||||||| || ||||| || |||||| ||||||| | |||
Sbjct 613 -AAAGAGCTTACTAAAATGCAACTGGACAATCAGAAAGAGATTGCCGAGATGCAAAATGA 555
Query 5642 ATAACAATTTGCAGATTGCTGGCATTCAGTCCGCTACATCTCGCCAGAATACGAAGGATT 5701
||| | ||||||||||||||||||| || || || |||||||||||||| ||
Sbjct 554 GACTCAAAAAG-AGATTGCTGGCATTCAGTCGGCGACTTCACGCCAGAATACGAAAGACC 496
Query 5702 CTGTTTATGCCCAGAATGAGATGCTTCAGTATAATCAACGTGAGTCGCAGGCACGCGTTG 5761
|| ||||| || |||||||||||| ||| | || ||||| || |||||||
Sbjct 495 AGGTATATGCACAAAATGAGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCGCGTTG 436
Query 5762 CGTCCAT 5768
|||| ||
Sbjct 435 CGTCTAT 429
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 19384095410888
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