Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_006555.1 Length=5039 Score E Sequences producing significant alignments: (Bits) Value seq41188 78.8 3e-11 >seq41188 Length=1311 Score = 78.8 bits (86), Expect = 3e-11 Identities = 243/361 (67%), Gaps = 20/361 (6%) Strand=Plus/Plus Query 2236 CCTAGTGCTGGTAAAAATTATTTTATAGACGCTATATTGTC-CTTTTATTTGAATACTGG 2294 |||| ||| || |||||||||||| | ||||| | ||||| || || | | ||| ||| Sbjct 409 CCTAATGCAGGAAAAAATTATTTTTTTGACGC-AGTTTGTCACTATTGTATAAATTATGG 467 Query 2295 AATTATATTAAACTTTAATAGATTTAGTCAATTTCCACTTATGGAAGCTGTTAATAGACG 2354 | || |||||||| |||| | || |||||| ||||||||| | | ||| ||| Sbjct 468 ACAAATGGGTAACTTTAACAGATATTGTTCATTTCCTCTTATGGAATGTATAGATAAACG 527 Query 2355 TGTAAATGTATGGAATGAACC--TAATTTTGAACCTGCAGCTTTAGACACCATAAAAATG 2412 ||| | ||||| ||||| ||| | || || | |||| |||| ||| |||||| Sbjct 528 AATAATATTGTGGAACGAACCATTAA--TGGAGCCGTCTGCTTCTGACA-CATTAAAATG 584 Query 2413 T-TGTTAGCTGGTGATCCTTTAAAAGTAAATGTAAAATATCAAAAAGA-ACAATATTTGC 2470 | | |||| || ||| || | ||| |||||| |||| ||| || || || Sbjct 585 TATATTAGGAGGAGATATACGCAATGCAAAAATAAAATTTCAAGGAGACGCAGTAATT-A 643 Query 2471 AAAAAACTCC---TATAATTGTAATGACAAACAAACCTGTATTTCCAAACGATTTAGCTT 2527 | |||||| ||||| | || | ||||| ||| |||||||| | ||||| Sbjct 644 TGAGAACTCCTGTTATAAGTTTA---AGCAACAATGATGTTTTTCCAAAAAACGAAGCTT 700 Query 2528 TTCATGATCGTGTATGTACC--TATTTTTGGAAACGAGCGCCATTTTTAAAAGAATATCA 2585 ||| | | | | |||| | ||| |||||||| || || ||||||||| ||||| | Sbjct 701 TTCGT-AGC-AGAATGTTTCAATATAATTGGAAACCTGCACCTTTTTTAAAACAATATAA 758 Query 2586 T 2586 | Sbjct 759 T 759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15988447483560