Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_023886.1 Length=1741 Score E Sequences producing significant alignments: (Bits) Value seq375 105 7e-20 seq2008 102 9e-19 >seq375 Length=19374 Score = 105 bits (116), Expect = 7e-20 Identities = 87/106 (82%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 788 CGTCATCATCGACGACTTCTATGGATGGATAAAATACGACGAACTTCTTAAAATATGTGA 847 ||||||||| ||||| || | || ||| |||||||||||||||| || ||||| ||||| Sbjct 5755 CGTCATCATAGACGATTTGCACGGTTGGCTAAAATACGACGAACTGCTGAAAATCTGTGA 5814 Query 848 CCGATATCCATACAAGGTTCAAATAAAAGGAGGCTTTGAAGAATTC 893 ||| || |||||||| || ||| ||||||||| | ||||||||| Sbjct 5815 CCGTTACCCATACAAAGTGGAAACAAAAGGAGGATACGAAGAATTC 5860 >seq2008 Length=13179 Score = 102 bits (112), Expect = 9e-19 Identities = 113/147 (77%), Gaps = 4/147 (3%) Strand=Plus/Plus Query 753 GGTCTA--TGGTGGGATGGTTATCAACAGCAGACTAGC-GTCATCATCGACGACTTCTAT 809 |||||| |||||| | || |||| | | | || ||| || |||||||||||||||||| Sbjct 3664 GGTCTAACTGGTGGCACGGATATCTGCGGGA-ACCAGCCGTAATCATCGACGACTTCTAT 3722 Query 810 GGATGGATAAAATACGACGAACTTCTTAAAATATGTGACCGATATCCATACAAGGTTCAA 869 || ||| | || ||||||||||| || || || || |||||||| || || || ||| | Sbjct 3723 GGCTGGCTCAAGTACGACGAACTACTAAAGATCTGCGACCGATACCCTTATAAAGTTGAG 3782 Query 870 ATAAAAGGAGGCTTTGAAGAATTCACC 896 | |||||||| || ||| | |||||| Sbjct 3783 ACCAAAGGAGGATTCGAAAAGTTCACC 3809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5462271677982