Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_025791.1 Length=1755 Score E Sequences producing significant alignments: (Bits) Value seq2008 93.3 5e-16 seq375 87.8 2e-14 >seq2008 Length=13179 Score = 93.3 bits (102), Expect = 5e-16 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 886 GGTGAATTCCTCGAATCCTCCTTTAATCTGTACCTTGTATGGGTAGCGGTCCATTATTTT 945 |||||| | |||||||||||||| ||| || || || ||||| ||||| || || Sbjct 3809 GGTGAACTTTTCGAATCCTCCTTTGGTCTCAACTTTATAAGGGTATCGGTCGCAGATCTT 3750 Query 946 CAGCATTTCGTCATACTTTATCCAGCCGTAGAAGTCGTCGATGATTACG 994 || | |||||| ||||| | |||||| ||||||||||||||||||||| Sbjct 3749 TAGTAGTTCGTCGTACTTGAGCCAGCCATAGAAGTCGTCGATGATTACG 3701 >seq375 Length=19374 Score = 87.8 bits (96), Expect = 2e-14 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 889 GAATTCCTCGAATCCTCCTTTAATCTGTACCTTGTATGGGTAGCGGTCCATTATTTTCAG 948 |||||| ||| |||||||||| | | || ||||||||||| ||||| |||||||| Sbjct 5860 GAATTCTTCGTATCCTCCTTTTGTTTCCACTTTGTATGGGTAACGGTCACAGATTTTCAG 5801 Query 949 CATTTCGTCATACTTTATCCAGCCGTAGAAGTCGTCGATGATTACG 994 || |||||| || |||| ||| |||| || ||||| ||||| ||| Sbjct 5800 CAGTTCGTCGTATTTTAGCCAACCGTGCAAATCGTCTATGATGACG 5755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5507070625546