Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_025792.1 Length=1790 Score E Sequences producing significant alignments: (Bits) Value seq375 86.0 7e-14 seq2008 84.2 2e-13 >seq375 Length=19374 Score = 86.0 bits (94), Expect = 7e-14 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 986 AATTCCTCGAAcccccccTTTATTTGTACTTTGTAAGGGTATCTGTCAGTAATTTTGAGT 1045 ||||| ||| | || || ||| ||| |||||||| ||||| | |||| ||||| || Sbjct 5859 AATTCTTCGTATCCTCCTTTTGTTTCCACTTTGTATGGGTAACGGTCACAGATTTTCAGC 5800 Query 1046 AGTTCGTCGTATTTGATCCACCCGTAGAAGTCGTCGATGATGACG 1090 |||||||||||||| | ||| |||| || ||||| ||||||||| Sbjct 5799 AGTTCGTCGTATTTTAGCCAACCGTGCAAATCGTCTATGATGACG 5755 >seq2008 Length=13179 Score = 84.2 bits (92), Expect = 2e-13 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 992 TCGAAcccccccTTTATTTGTACTTTGTAAGGGTATCTGTCAGTAATTTTGAGTAGTTCG 1051 ||||| || || || | | ||||| |||||||||| ||| || || ||||||||| Sbjct 3799 TCGAATCCTCCTTTGGTCTCAACTTTATAAGGGTATCGGTCGCAGATCTTTAGTAGTTCG 3740 Query 1052 TCGTATTTGATCCACCCGTAGAAGTCGTCGATGATGACG 1090 ||||| |||| ||| || ||||||||||||||||| ||| Sbjct 3739 TCGTACTTGAGCCAGCCATAGAAGTCGTCGATGATTACG 3701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5619067994456