Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galendromus_20occidentalis_20[refseq_20GCF_5F000255335.1_202012-03- 27] 2,211 sequences; 151,724,311 total letters Query= NC_031755.1 Length=2229 Score E Sequences producing significant alignments: (Bits) Value seq2008 127 3e-26 seq375 116 5e-23 >seq2008 Length=13179 Score = 127 bits (140), Expect = 3e-26 Identities = 121/155 (78%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 568 TACAAAAATAGAAGTAACTGGTGGCACGGATACCGACAAGAATCAACAGTCATCATCGAC 627 ||||||||||| |||||||||||||||||| | | ||| || | || ||||||||| Sbjct 3654 TACAAAAATAGGTCTAACTGGTGGCACGGATATCTGCGGGAACCAGCCGTAATCATCGAC 3713 Query 628 GACTTCTATGGATGGATTAAATGGGATGAACTCCTCAAAATCTGCGATCGTTACCCCTAC 687 ||||||||||| ||| | || | || ||||| || || |||||||| || ||||| || Sbjct 3714 GACTTCTATGGCTGGCTCAAGTACGACGAACTACTAAAGATCTGCGACCGATACCCTTAT 3773 Query 688 AAGGTGGAAACCAAAGGAGGATATGAAGAATTTAC 722 || || || ||||||||||||| ||| | || || Sbjct 3774 AAAGTTGAGACCAAAGGAGGATTCGAAAAGTTCAC 3808 >seq375 Length=19374 Score = 116 bits (128), Expect = 5e-23 Identities = 125/164 (76%), Gaps = 1/164 (1%) Strand=Plus/Plus Query 557 CAACCA-CATACTACAAAAATAGAAGTAACTGGTGGCACGGATACCGACAAGAATCAACA 615 |||||| | |||||||| || | |||||||| || | ||| | | ||| || | Sbjct 5696 CAACCAGCCTACTACAAGAACCGTTCAAACTGGTGCCATGCATATAGTCGGGAACCAGCC 5755 Query 616 GTCATCATCGACGACTTCTATGGATGGATTAAATGGGATGAACTCCTCAAAATCTGCGAT 675 |||||||| ||||| || | || ||| | |||| || ||||| || |||||||| || Sbjct 5756 GTCATCATAGACGATTTGCACGGTTGGCTAAAATACGACGAACTGCTGAAAATCTGTGAC 5815 Query 676 CGTTACCCCTACAAGGTGGAAACCAAAGGAGGATATGAAGAATT 719 |||||||| ||||| |||||||| ||||||||||| |||||||| Sbjct 5816 CGTTACCCATACAAAGTGGAAACAAAAGGAGGATACGAAGAATT 5859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7023834993070