Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20ismenius_20[genbank_20GCA_5F001485965.1_202015-12-16] 160,084 sequences; 259,837,422 total letters Query= NC_001270.2 Length=6825 Score E Sequences producing significant alignments: (Bits) Value seq3817 199 2e-47 seq67372 149 3e-32 seq127736 145 3e-31 seq84780 127 9e-26 seq150107 87.8 8e-14 >seq3817 Length=4434 Score = 199 bits (220), Expect = 2e-47 Identities = 292/408 (72%), Gaps = 5/408 (1%) Strand=Plus/Plus Query 2567 TGGTAATTATGTTAAAAATATTGTTTTACCACT-AGAATTAGTtaataataatcctcgta 2625 |||| ||||||||||||||| ||||||| | || || | | |||||| |||| Sbjct 1532 TGGTGCTTATGTTAAAAATATAATTTTACCTATGAGCGCTATATTA-AATAATAAACGTA 1590 Query 2626 ataaaatgggagttaaaaatactggaaaaaatgataaaaaatTGTGGAATAGTCGTATTC 2685 || || | || |||||||| || | ||||||||||| || |||||| ||||| Sbjct 1591 ATGAAGTTGGTATTAAAAATTTAGGTATTAATGATAAAAAGTTACTTAATAGTACTATTC 1650 Query 2686 GCTCGCAAGGAAATTGTATTCGGAAAGCATATGAAAATTTTTGAAATTGTAAAAATTTAA 2745 | | || || | || | ||||||| | | ||||||| |||| ||| ||||| Sbjct 1651 GTACTAAAACAAGATTAATACATAAAGCATTTCATAATTTTTATAATTCAAAAGTTTTAA 1710 Query 2746 GTTTTTTGACTTTAACTTATGCCGTTAATGAGAAAGATGTTAAAAAATGTAAAAATGATT 2805 ||||| | |||||||||||||| | ||| ||||||| |||| ||| ||| ||||| Sbjct 1711 GTTTTGTTACTTTAACTTATGCAGATAACATGAAAGATATTAATAAAGCAAAACATGATA 1770 Query 2806 TAAAGTTATTTTTTAATAATATAAATCGTTGATGAAACAATCCTATTCGTTCTAAAAATC 2865 | |||| ||||| | |||| ||||||||||| | |||| ||| ||||| || Sbjct 1771 TTGCTATATTCTTTAAACGTTTAAAGCGTTGATGAAATGACCCTAAACGTGCTAAATAT- 1829 Query 2866 ATAAAGGAATTTTAAAATATATGTATACTTATGAGTATCAAAAACGCGGAGCAGTTCACT 2925 || ||| ||||||||||||||| ||| || ||||||||||| || || |||| | Sbjct 1830 TTAGGTGAA--TTAAAATATATGTATGTTTACGAATATCAAAAACGTGGTGCTATTCATT 1887 Query 2926 TTCATATCATATTAAACCAAAAAATACCTAACAGTGTTGTACAACAAT 2973 ||||||| |||| ||| |||||||| ||| ||| | ||| ||||| Sbjct 1888 TTCATATACTATTTAACAGAAAAATACATAAGAGTATGTTACCACAAT 1935 >seq67372 Length=4824 Score = 149 bits (164), Expect = 3e-32 Identities = 289/422 (68%), Gaps = 11/422 (3%) Strand=Plus/Minus Query 2573 TTATGTTAAAAATATTGTTTTACC-ACTAGAATTAGTtaataataatcctcgtaataaaa 2631 |||| ||||||||||||||||||| | | |||| || || |||| | | ||||||| Sbjct 916 TTATTTTAAAAATATTGTTTTACCTATTTCAATT--TTGAT--TAATATTGGGAATAAAA 861 Query 2632 tgggagttaaaaatactggaaaaaatgataaaaaatTGTGGAATAGTCGTATTCGCTCGC 2691 || |||| | || ||| | |||||||| | |||||| | |||| | Sbjct 860 AAGG---TAAATGTTATGTTGGTAATAAGCAAAAATTGAGAAATAGTACTGTTCGTACTA 804 Query 2692 AAGGAAATTGTATTCGGAAAGCATATGAAAATTTTTGAAATTGTAAAAATTTAAGTTTTT 2751 || |||| |||| ||||||| | ||||||| ||| |||||| ||||||||| Sbjct 803 AAACTAATTTAATTCAAAAAGCATTACATAATTTTTATAATAGTAAAATGTTAAGTTTTG 744 Query 2752 TGACTTTAACTTATGCCGTTAATGAGAAAGATGTTAAAAAATGTAAAAATGATTTAAAGT 2811 | |||||||||||| | |||| | |||||||||||||| ||||| ||| | | Sbjct 743 TTACTTTAACTTATAAAGATAATATGCAAGATGTTAAAAAAGCAAAAAAAGATATTGGTT 684 Query 2812 TATTTTTTAATAATATAAATCGTTGATGAAACAATCCTATTCGTTCTAAAAATCATAAAG 2871 |||||||| ||| || | |||||||| | |||| |||| | || || || Sbjct 683 TATTTTTTGTTAAATTACAAAAGTGATGAAATGACCCTAAACGTTTT---CATTATTTAG 627 Query 2872 GAATTTTAAAATATATGTATACTTATGAGTATCAAAAACGCGGAGCAGTTCACTTTCATA 2931 || ||||||||| | ||| ||||||||||||| || || || | || ||||||| Sbjct 626 GAGAATTAAAATATTTTTATGTTTATGAGTATCAATCTCGTGGCGCTATACATTTTCATA 567 Query 2932 TCATATTAAACCAAAAAATACCTAACAGTGTTGTACAACAATACTGAAAACACGGTATTA 2991 | || || || ||| |||| ||| ||| | || | ||| |||| || ||| ||| Sbjct 566 TAATTTTTAATAGAAAGATACATAAAAGTATGTTAGCAGAATGATGAAGTCATGGTTTTA 507 Query 2992 AT 2993 || Sbjct 506 AT 505 >seq127736 Length=5091 Score = 145 bits (160), Expect = 3e-31 Identities = 263/381 (69%), Gaps = 9/381 (2%) Strand=Plus/Minus Query 2573 TTATGTTAAAAATATTGTTTTACCACTAGAATTAGTtaataataatcctcgtaataaaat 2632 ||||||||||||| || ||||||| || | || | | || ||| | |||||| | Sbjct 1861 TTATGTTAAAAATGTTATTTTACC--TATTAATA-TGATTAGAAATGAAAGAAATAAATT 1805 Query 2633 gggagttaaaaatactggaaaaaatgataaaaaatTGTGGAATAGTCGTATTCGCTCGCA 2692 || | || |||| ||| || ||||| || || | |||| | | |||| | | Sbjct 1804 AGGTATAAAGAATATTGGTAA---TGATACTAAGTTAAGAAATAATAATGTTCGTACTAA 1748 Query 2693 AGGAAATTGTATTCGGAAAGCATATGAAAATTTTTGAAATTGTAAAAATTTAAGTTTTTT 2752 | | || | ||| ||||||| | ||||||| ||| | || ||||| |||||| Sbjct 1747 ATGTAAATTAGTTCAAAAAGCATTACATAATTTTTATAATGCAAGAATTTTAAATTTTTT 1688 Query 2753 GACTTTAACTTATGCCGTTAATGAGAAAGATGTTAAAAAATGTAAAAATGATTTAAAGTT 2812 |||||||||||| ||||| | ||| |||||||| || |||||||| | || Sbjct 1687 AACTTTAACTTATCATAAAAATGAAACTGATATTAAAAAAGCAAAGCATGATTTACAATT 1628 Query 2813 ATTTTTTAATAATATAAATCGTTGATGAAACAATCCTATTCGTTCTAAAAATCATAAAGG 2872 ||||||| | | |||| ||||||||||| | |||| ||||||||| ||| ||| Sbjct 1627 ATTTTTTTAACGTTTAAAACGTTGATGAAATGACCCTAAACGTTCTAAA---CATTTAGG 1571 Query 2873 AATTTTAAAATATATGTATACTTATGAGTATCAAAAACGCGGAGCAGTTCACTTTCATAT 2932 |||| |||| | ||| |||||| |||||||| || || |||||| | ||||| || Sbjct 1570 TGAATTAAGATATTTTTATGTTTATGAATATCAAAAGCGTGGTGCAGTTTATTTTCACAT 1511 Query 2933 CATATTAAACCAAAAAATACC 2953 |||| || | |||||||| Sbjct 1510 ATTATTTAATCGTAAAATACC 1490 >seq84780 Length=1123 Score = 127 bits (140), Expect = 9e-26 Identities = 282/421 (67%), Gaps = 9/421 (2%) Strand=Plus/Plus Query 2573 TTATGTTAAAAATATTGTTTTACCACTAGAATTAGTtaataataatcctcgtaataaaat 2632 ||||||||||||| | |||||||| | || | ||||||| | | ||||||| Sbjct 452 TTATGTTAAAAATGTAGTTTTACCTATTTCTTTTTTAAATAATATTG---GAAATAAAAA 508 Query 2633 gggagttaaaaatactggaaaaaatgataaaaaatTGTGGAATAGTCGTATTCGCTCGCA 2692 || |||| | || ||| | ||||||| | |||| | | |||| | | Sbjct 509 AGG---TAAATGTTATGTTGGTAATAAACAAAAATTAAGAAATAATACTGTTCGTACTAA 565 Query 2693 AGGAAATTGTATTCGGAAAGCATATGAAAATTTTTGAAATTGTAAAAATTTAAGTTTTTT 2752 | |||| |||| ||||||| | ||||||| || |||||| ||||||||| | Sbjct 566 AACTAATTTAATTCAAAAAGCATTACATAATTTTTATGATAGTAAAATGTTAAGTTTTGT 625 Query 2753 GACTTTAACTTATGCCGTTAATGAGAAAGATGTTAAAAAATGTAAAAATGATTTAAAGTT 2812 |||||||||||| | |||| | ||||| |||||||| ||||| ||| | || Sbjct 626 TACTTTAACTTATAAAGATAATATGCAAGATATTAAAAAAGCAAAAAAAGATATTCGTTT 685 Query 2813 ATTTTTTAATAATATAAATCGTTGATGAAACAATCCTATTCGTTCTAAAAATCATAAAGG 2872 ||||||| ||| |||| |||||||| | |||| |||| | || ||| ||| Sbjct 686 ATTTTTTCTTAAATTAAAGAAATGATGAAATGACCCTAAACGTTTTGAA---CATTTAGG 742 Query 2873 AATTTTAAAATATATGTATACTTATGAGTATCAAAAACGCGGAGCAGTTCACTTTCATAT 2932 | ||||||||| | ||| |||||| |||||| || || || |||| |||||||| Sbjct 743 AGAATTAAAATATTTTTATGTTTATGAATATCAAGTGCGTGGTGCTATTCATTTTCATAT 802 Query 2933 CATATTAAACCAAAAAATACCTAACAGTGTTGTACAACAATACTGAAAACACGGTATTAA 2992 || || || ||| |||| || ||| | || | ||| |||| || ||| |||| Sbjct 803 AATTTTTAATAGAAAGATACACAAAAGTATGTTAGCAGAATGATGAACTCATGGTTTTAA 862 Query 2993 T 2993 | Sbjct 863 T 863 >seq150107 Length=415 Score = 87.8 bits (96), Expect = 8e-14 Identities = 188/276 (68%), Gaps = 9/276 (3%) Strand=Plus/Plus Query 2567 TGGTAATTATGTTAAAAATATTGTTTTACCACTAGAATTAGTtaataataatcctcgtaa 2626 ||||||||||||||||||| |||||||||| | ||| ||| | ||| | || Sbjct 146 TGGTAATTATGTTAAAAATGTTGTTTTACCTATGTCGTTAATTATTGGAAATAAAAGAAA 205 Query 2627 taaaatgggagttaaaaatactggaaaaaatgataaaaaatTGTGGAATAGTCGTATTCG 2686 | ||| || | ||||||| ||| || | | |||| || | |||| | |||||| Sbjct 206 TGAAAAAGGTATAAAAAATATTGGTAATATTACTAAA---TTACGAAATAATACTATTCG 262 Query 2687 CTCGCAAGGAAA--TTGTATTCGGAAAGCATATGAAAATTTTTGAAATTGTAAAAATTTA 2744 | ||| || || |||| ||| ||| | | |||||| | | | |||| | | Sbjct 263 TAC--AAGAAATGCTTTAATTCATAAAACATTTCATAATTTTAGTAGTGCTAAATGTCTT 320 Query 2745 AGTTTTTTGACTTTAACTTATGCCGTTAATGAGAAAGATGTTAAAAAATGTAAAA-ATGA 2803 ||||| |||||||||||| | ||||| | ||| ||||| || | |||| |||| Sbjct 321 TCATTTTTAACTTTAACTTATAAAGATAATGTTACTGAT-TTAAATAAAGCAAAACATGA 379 Query 2804 TTTAAAGTTATTTTTTAATAATATAAATCGTTGATG 2839 |||| | || |||||||| | |||| |||||||| Sbjct 380 TTTACAATTGTTTTTTAAACGTTTAAAGCGTTGATG 415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 21685674830064