Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_030296.1 Length=5071 Score E Sequences producing significant alignments: (Bits) Value seq131668 104 8e-19 >seq131668 Length=1192 Score = 104 bits (114), Expect = 8e-19 Identities = 128/175 (73%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 1923 TAGCTaaaaaaaaTACCTTTTTTGTTCTCTCCCCATCGAATGCTGGCAAAAATTTTTTCT 1982 |||| || || |||||| | | ||| | || | | | ||| || ||||||||||||| Sbjct 250 TAGCCAAGAAGAATACCATGTACGTTATATCTACTCCAAGTGCAGGAAAAAATTTTTTCT 309 Query 1983 TCGATTGCATTGTACATTTTTATTTGAATTTCGGTCTGATCGGTAATTTTAATAAGTACC 2042 | |||||| | |||| |||| | | ||||| || | || || |||||||||| || | Sbjct 310 TTGATTGCTTCATACACTTTTGTATAAATTTTGGACAAATGGGGAATTTTAATAGATATC 369 Query 2043 AAAATTTCCCTTTACAAGAGTGTGTTCACAAACGTATTCTTCTGTGGAACGAACC 2097 ||||||| ||| |||| |||||||| | ||| | || || | ||||| ||||| Sbjct 370 AAAATTTTCCTCTACAGGAGTGTGTGAATAAAAGAATAATTTTATGGAATGAACC 424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16091705599560