Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_021862.1 Length=8576 Score E Sequences producing significant alignments: (Bits) Value seq2224 367 7e-98 >seq2224 Length=1872321 Score = 367 bits (406), Expect = 7e-98 Identities = 566/796 (71%), Gaps = 14/796 (2%) Strand=Plus/Plus Query 6545 AGTCGCCCGCGCATCATCCACAGATTGCTCAGGGCAAACAGCGTGTGTAATTGCTGTGTG 6604 ||| | | ||||| ||||||||| ||| || || ||||||||||| | |||| ||| Sbjct 774625 AGTTGGCGGCGCACCATCCACAGGTTGGATAGCGCGAACAGCGTGTGCAGTTGCGCCGTG 774684 Query 6605 TTCTTTATCAAGCCTCGATAGCGCACCCTCAAGTGCCCAAACTGGCGCTTGATGACTCGG 6664 ||||| || || |||||||||||| ||| |||||||||| | |||||||| || ||| Sbjct 774685 TTCTTCCCCAGCCCGCGATAGCGCACCTTCATGTGCCCAAACCGCCGCTTGATCACGCGG 774744 Query 6665 AACGGATGTTCCACGCGGGCACGAATGCGCGCCTTGACCCGCTCCAGCTCATCGA-CGAG 6723 ||||| || ||||| ||| | |||| ||||||| ||||| ||| |||| | || Sbjct 774745 AACGGGTGCTCCACCTTGGCTCTGATGCTGGCCTTGAGTATCTCCACCTCGTCGATCAAG 774804 Query 6724 CGCACCCGACACGGTGCTCTTGTCCAAGGCGCGGCGTTTGCCCGGGCGTAATGCCACATG 6783 || || | | ||||||||||| || ||||| |||||||| || | || | | Sbjct 774805 CG-ACTCACTTCTTGGCTCTTGTCCAGCGCCCGGCGCTTGCCCGGCCGCATCGCGATGTT 774863 Query 6784 CCAACGCACCTTCAACTCCTGCACCTCTTCGCGCTTGTCGATGCCCTGATAGCCGGCATC 6843 ||| ||| ||| ||| || ||||||| | | ||||| ||||| ||||| Sbjct 774864 CCAGTCGACCCCTGACTTG-GCA--TCAGGGCGCTTGGCCACACCCTGGTAGCCCGCATC 774920 Query 6844 GCCGAACACGTCGGCCTCCTTGCCATGCACCAATGCGTTGCGCTGGCGTCACGTCGTTGA 6903 ||| || | | | ||||| ||| |||| || ||||||| || | ||||| || | || Sbjct 774921 GCCAAATGCCACTGTCTCCTCGCCGTGCAGCAGTGCGTTGGCCTCG-GTCACATCATGGA 774979 Query 6904 CGTTGGCGGCCGTGCCCACTACGGTGTGCACCAGCCCCGAGTCCGCATCCACACCAATGT 6963 || || | || ||||| |||||||||||||| |||||||| |||||||| ||||||| Sbjct 774980 CGCTGCCAGCGGTGCCTCGAACGGTGTGCACCAGTCCCGAGTCAGCATCCACGCCAATGT 775039 Query 6964 GCGCTTTCATGCCGAAATGCCACTGGTTACCTTTCTTGGTCTGGTGCATCTCTGGGTCAC 7023 |||| ||||||||||| | |||||| || |||||| || | | |||||| || | | Sbjct 775040 GCGCCTTCATGCCGAAGTACCACTGACCGCCCTTCTTGCTCGGCTTCATCTCCGGATTGC 775099 Query 7024 GCTTGCCGCTGCCATTCTTGGTCGAACTGGGCGCGGCAATCAGCGAGGCGTCGACCACCG 7083 | | ||| | | ||||||||||| || |||||||||||||| | |||||| ||||||| Sbjct 775100 GTTCGCCCTGGGCGTTCTTGGTCGAGCTTGGCGCGGCAATCAGTGTGGCGTCCACCACCG 775159 Query 7084 TGCACGTCTTTGAGCAGGTAGCCCTTCGC-ACTGAGTTGCGCGTTGACGGTCTGCAGAAA 7142 ||| | | |||| || |||| || | || | |||||| ||||| || | Sbjct 775160 TGC-CTGCGCGAAGCA-TCAGGCCTTTGCTGCGCAGCAGATCGTTGATCGTCTGAAGGAT 775217 Query 7143 TTGCTCGGCTAACTGGTGTCGCTCCAGCAAGTGCCGAAAGCGCAGAATGCTGACCCGGTC 7202 || || | || ||| |||||||| | ||||||| ||||| ||| || | ||| Sbjct 775218 CTGGGGTGCCATCTTGTGCTTCTCCAGCACGCGCCGAAACCGCAGGATGGTGGTCTTGTC 775277 Query 7203 CGGCAGTCGGCTTATGCC----TCCCAGCCCCGCGAATTGCCGATACAACGGCACGTCGT 7258 ||| | ||||| || || ||| || || ||||| | ||| ||| | || ||| Sbjct 775278 CGGGA-CCGGCTCATTCCAGATTCCAAGACCAGCGAAGTCCCGGAACAGCACCATGTCAC 775336 Query 7259 ACAGCGCCTCTTCCATCGCCACGTCCGTCAGCCCGAACCATTGCTGCAGAAAGTGGATGC 7318 ||||||||||||||| ||| ||| |||| |||||| ||||||| || || || | Sbjct 775337 GCAGCGCCTCTTCCATGGCCGGGTCGCTCAGGTTGAACCACTGCTGCATGAAATGAATTC 775396 Query 7319 GCAGCATCGTTTCGAC 7334 |||||||| ||| || Sbjct 775397 GCAGCATCACTTCCAC 775412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 27322466080000