Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_014927.1 Length=1838 Score E Sequences producing significant alignments: (Bits) Value seq49779 98.7 1e-17 >seq49779 Length=5410 Score = 98.7 bits (108), Expect = 1e-17 Identities = 130/178 (73%), Gaps = 2/178 (1%) Strand=Plus/Plus Query 727 ACGGGTATACTACAAACCTAGAGGAGACTGGTGGGATGGATACAACGGACATGAATGCGT 786 ||| || || || || || |||||| |||||||| || ||| | | ||| ||| Sbjct 4966 ACGAGTCTATTATAAGCCGAGAGGACCATGGTGGGACGGCTACGATCAGGAAGAAGCCGT 5025 Query 787 CATCTTCGATGACTTCTACGGATGGATAAAATACGACGAAGTACTTAAGATATGCGATCG 846 |||| | || || |||||||||||||||||||| || || || | || ||||| || | Sbjct 5026 CATCATTGACGATTTCTACGGATGGATAAAATATGATGAGTTATTAAAAATATGTGACAG 5085 Query 847 TTATCCTTATCGCGTACCAGTCAAAGGTGGATACG-AGAATTTTATTGCGaaaaaaaT 903 ||||| || ||||| || |||||||||| | ||||||||||| | |||| ||| Sbjct 5086 ATATCCACATAAGGTACCGGTTAAAGGTGGATTTGAAGAATTTTATT-CTAAAATAAT 5142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5764185420136