Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_014928.1 Length=1751 Score E Sequences producing significant alignments: (Bits) Value seq49779 93.3 5e-16 >seq49779 Length=5410 Score = 93.3 bits (102), Expect = 5e-16 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 565 TACTACAAACCCCGAGGATTATGGTGGGATGGCTATGAACAACAGCGCAGC-GTTATAAT 623 || || || || ||||| ||||||||| ||||| || || | | ||| || || || Sbjct 4973 TATTATAAGCCGAGAGGACCATGGTGGGACGGCTACGATCAGGAA-GAAGCCGTCATCAT 5031 Query 624 AGACGACTTCTATGGATGGATAAAGTACGACGAAATGCTGAAAATAATGGACCGCTACCC 683 ||||| ||||| ||||||||||| || || || | | |||||| ||| | || || Sbjct 5032 TGACGATTTCTACGGATGGATAAAATATGATGAGTTATTAAAAATATGTGACAGATATCC 5091 Query 684 ATACAAGGTACAAATAAAAGGAGGATTTCAAGAATTCACATCAGAAAAAATTTTTATTAC 743 | | ||||||| | ||||| |||||| ||||||| || ||| |||| | || || Sbjct 5092 ACATAAGGTACCGGTTAAAGGTGGATTTGAAGAATTTTATTCTAAAATAATTATAATAAC 5151 Query 744 TTCAAATGTCGACGTTTGTGACTTATACAAATT 776 |||||| | || || | ||| | || ||||| Sbjct 5152 CTCAAATATAGAGGTATCTGAATGGTATAAATT 5184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5486200868278