Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_014930.1 Length=1760 Score E Sequences producing significant alignments: (Bits) Value seq49779 93.3 5e-16 >seq49779 Length=5410 Score = 93.3 bits (102), Expect = 5e-16 Identities = 117/159 (74%), Gaps = 4/159 (3%) Strand=Plus/Plus Query 563 TCTACTATAAACCACGAGGTCTGTGGGGGGACGGCTATACAAACCAGAA--ATGTGTTAT 620 |||| ||||| || |||| | ||| |||||||||| | | | ||| | || || Sbjct 4971 TCTATTATAAGCCGAGAGGACCATGGTGGGACGGCTA--CGATCAGGAAGAAGCCGTCAT 5028 Query 621 TATTGACGACTTCTACGGATGGATAAAATACGACGAACTACTGAAAATTTGCGACCGTTA 680 |||||||| |||||||||||||||||||| || || || | ||||| || ||| | || Sbjct 5029 CATTGACGATTTCTACGGATGGATAAAATATGATGAGTTATTAAAAATATGTGACAGATA 5088 Query 681 TCCTTACAAAGTACAAATAAAAGGGGGATTCGAAGAATT 719 ||| | || |||| | ||||| ||||| |||||||| Sbjct 5089 TCCACATAAGGTACCGGTTAAAGGTGGATTTGAAGAATT 5127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5514957890884