Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_023867.1 Length=1740 Score E Sequences producing significant alignments: (Bits) Value seq49779 107 2e-20 >seq49779 Length=5410 Score = 107 bits (118), Expect = 2e-20 Identities = 167/233 (72%), Gaps = 12/233 (5%) Strand=Plus/Minus Query 807 GTATTGTATCCTTCAAATTTATA----TAAAAAATCTGTATCGACATTTGTTGTTATCCA 862 ||||| ||||| | ||||||||| | | | | || ||| ||||| ||||| | Sbjct 5199 GTATTATATCCGTTAAATTTATACCATTCAGATACCTCTAT----ATTTGAGGTTATT-A 5145 Query 863 TAATTTCTCTGTTGTAAA-TTCCTCGAATCCTCCTTTCACTTGAACTTGGTATGGGTAGC 921 ||||| | | |||| ||| || ||||| ||||| || | || | | ||| || | Sbjct 5144 TAATTATTTTAGAATAAAATTCTTCAAATCCACCTTTAACCGGTACCTTATGTGGATATC 5085 Query 922 GGTC-CATAATTTTGAGCATTTCGTCATATTTTATCCATCCGTAGAAGTCATCGATTATT 980 ||| |||| |||| | | | | ||||||||||||||||||||||| || || || || Sbjct 5084 TGTCACATATTTTTAATAACT-CATCATATTTTATCCATCCGTAGAAATCGTCAATGATG 5026 Query 981 ACGCATTTTTGTTGTTGGTATCCGTCCCACCATAGTCCTCTGGGCTTGTAATA 1033 ||| || || || | ||| |||||||||||| ||||||| ||||| ||||| Sbjct 5025 ACGGCTTCTTCCTGATCGTAGCCGTCCCACCATGGTCCTCTCGGCTTATAATA 4973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5451053396204