Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_023869.1 Length=1896 Score E Sequences producing significant alignments: (Bits) Value seq49779 111 2e-21 >seq49779 Length=5410 Score = 111 bits (122), Expect = 2e-21 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 1018 AAATTCTTGAAAGCCTCCTTTGATCGGTACTTTGTAGGGGTATCTGTCACAAATTTTGAG 1077 |||||||| ||| || ||||| | |||||| || | || ||||||||||| ||||| | Sbjct 5128 AAATTCTTCAAATCCACCTTTAACCGGTACCTTATGTGGATATCTGTCACATATTTTTAA 5069 Query 1078 TAGGTCGTCGTATTTGATCCATCCGTAGAAGTCGTCTATAATTACACTTGTTTGTTGGTG 1137 || || || ||||| |||||||||||||| ||||| || || || | || || | Sbjct 5068 TAACTCATCATATTTTATCCATCCGTAGAAATCGTCAATGATGACGGCTTCTTCCTGATC 5009 Query 1138 GTATCCGTCCCACCATTCTCCTCTTGGTTTGTAGTA 1173 ||| |||||||||||| |||||| || || || || Sbjct 5008 GTAGCCGTCCCACCATGGTCCTCTCGGCTTATAATA 4973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5949508454708