Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_023874.1 Length=1790 Score E Sequences producing significant alignments: (Bits) Value seq49779 152 6e-34 >seq49779 Length=5410 Score = 152 bits (168), Expect = 6e-34 Identities = 174/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 722 GTCTATTATAAACCCAGAGGAGAATGGTGGGACGGCTACATGCAGCAAACGTCTGTTATT 781 ||||||||||| || |||||| |||||||||||||||| ||| || | || || Sbjct 4970 GTCTATTATAAGCCGAGAGGACCATGGTGGGACGGCTACGATCAGGAAGAAGCCGTCATC 5029 Query 782 ATAGATGACTTCTATGGCTGGATAAAATACGATGAACTGCTGAAAATATGTGACAGATAC 841 || || || ||||| || ||||||||||| ||||| | | ||||||||||||||||| Sbjct 5030 ATTGACGATTTCTACGGATGGATAAAATATGATGAGTTATTAAAAATATGTGACAGATAT 5089 Query 842 CCACACAAGGTTCCAATAAAAGGAGGATTCGAAG-AGTTTACAAGCAAATATATTTTTAT 900 ||||| ||||| || | ||||| ||||| |||| | |||| ||||| ||| | || Sbjct 5090 CCACATAAGGTACCGGTTAAAGGTGGATTTGAAGAATTTTATTCTAAAATA-ATTATAAT 5148 Query 901 TACTTCAAATGTTGATGTATGTGACTTGTACAAATTCAATGGTTATACTAC 951 || |||||| | || |||| ||| | ||| ||||| || || |||| ||| Sbjct 5149 AACCTCAAATATAGAGGTATCTGAATGGTATAAATTTAACGGATATAATAC 5199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5610814632904