Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_023886.1 Length=1741 Score E Sequences producing significant alignments: (Bits) Value seq49779 122 9e-25 >seq49779 Length=5410 Score = 122 bits (134), Expect = 9e-25 Identities = 169/232 (73%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 736 TCTATTATAAACCGCGTGGTCTATGGTGGGATGGTTATCAACAGCAGACTAGC-GTCATC 794 |||||||||| ||| | || | ||||||||| || || | ||| | | ||| |||||| Sbjct 4971 TCTATTATAAGCCGAGAGGACCATGGTGGGACGGCTACGATCAGGA-AGAAGCCGTCATC 5029 Query 795 ATCGACGACTTCTATGGATGGATAAAATACGACGAACTTCTTAAAATATGTGACCGATAT 854 || ||||| ||||| |||||||||||||| || || | | |||||||||||| ||||| Sbjct 5030 ATTGACGATTTCTACGGATGGATAAAATATGATGAGTTATTAAAAATATGTGACAGATAT 5089 Query 855 CCATACAAGGTTCAAATAAAAGGAGGCTTTGAAGAATTCACCAGTAAATATATTTTTATT 914 ||| | ||||| | | ||||| || ||||||||||| |||| ||| | || Sbjct 5090 CCACATAAGGTACCGGTTAAAGGTGGATTTGAAGAATTTTATTCTAAAATAATTATAATA 5149 Query 915 ACCAGCAATGTAGATACATGCGACTTGTATAAATTT--CGTAATTATAATAC 964 ||| ||| |||| || || | |||||||||| || | |||||||| Sbjct 5150 ACCTCAAATATAGAGGTATCTGAATGGTATAAATTTAACGGA--TATAATAC 5199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5454248620938