Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_024700.1 Length=1773 Score E Sequences producing significant alignments: (Bits) Value seq49779 109 6e-21 >seq49779 Length=5410 Score = 109 bits (120), Expect = 6e-21 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 547 TACTACAAACCCAGAGGAGATTGGTGGGATGGATACGAACAACAACCAAATGTTATCATC 606 || || || || |||||| |||||||| || ||||| || || | || ||||| Sbjct 4973 TATTATAAGCCGAGAGGACCATGGTGGGACGGCTACGATCAGGAAGAAGCCGTCATCATT 5032 Query 607 GACGATTTCTACGGATGGATCAAATACGACGAACTATTAAAAATAATGGATAGATACCCA 666 |||||||||||||||||||| ||||| || || ||||||||||| || ||||| ||| Sbjct 5033 GACGATTTCTACGGATGGATAAAATATGATGAGTTATTAAAAATATGTGACAGATATCCA 5092 Query 667 TACAGAGTACCAGTAAAAGGAGGATACCAAATTTTTAACTCAAAAAGAATTTGGATAACA 726 | | ||||| || ||||| |||| || ||| | || |||| |||| ||||| Sbjct 5093 CATAAGGTACCGGTTAAAGGTGGATTTGAAGAATTTTATTCTAAAATAATTATAATAACC 5152 Query 727 TCTAATAT 734 || ||||| Sbjct 5153 TCAAATAT 5160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5556495812426