Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_025791.1 Length=1755 Score E Sequences producing significant alignments: (Bits) Value seq49779 100 3e-18 >seq49779 Length=5410 Score = 100 bits (110), Expect = 3e-18 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 890 AATTCCTCGAATCCTCCTTTAATCTGTACCTTGTATGGGTAGCGGTCCATTATTTTCAGC 949 ||||| || ||||| ||||||| | ||||||| | ||| || | ||| |||||| | Sbjct 5127 AATTCTTCAAATCCACCTTTAACCGGTACCTTATGTGGATATCTGTCACATATTTTTAAT 5068 Query 950 ATTTCGTCATACTTTATCCAGCCGTAGAAGTCGTCGATGATTACGCAATCATGTTGTTGA 1009 | || ||||| |||||||| |||||||| ||||| ||||| ||| || | || | Sbjct 5067 AACTCATCATATTTTATCCATCCGTAGAAATCGTCAATGATGACGGCTTCTTCCTGATCG 5008 Query 1010 TATCCGTCCCACCATAGTCCACGAGGTTTATAGTA 1044 || |||||||||||| |||| | || ||||| || Sbjct 5007 TAGCCGTCCCACCATGGTCCTCTCGGCTTATAATA 4973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5498981767214