Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_025792.1 Length=1790 Score E Sequences producing significant alignments: (Bits) Value seq49779 91.5 2e-15 >seq49779 Length=5410 Score = 91.5 bits (100), Expect = 2e-15 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 985 AAATTCCTCGAAcccccccTTTATTTGTACTTTGTAAGGGTATCTGTCAGTAATTTTGAG 1044 |||||| || || || || || | |||| || | || ||||||||| ||||| | Sbjct 5128 AAATTCTTCAAATCCACCTTTAACCGGTACCTTATGTGGATATCTGTCACATATTTTTAA 5069 Query 1045 TAGTTCGTCGTATTTGATCCACCCGTAGAAGTCGTCGATGATGACGTTCTCTTGTTGCTT 1104 || || || ||||| ||||| |||||||| ||||| ||||||||| |||| || | Sbjct 5068 TAACTCATCATATTTTATCCATCCGTAGAAATCGTCAATGATGACGGCTTCTTCCTGATC 5009 Query 1105 GTATCCGTCCCACCACAAGCCCCTTGGCTTGTAGTAGA 1142 ||| ||||||||||| || || ||||| || |||| Sbjct 5008 GTAGCCGTCCCACCATGGTCCTCTCGGCTTATAATAGA 4971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5610814632904