Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_027530.1 Length=1789 Score E Sequences producing significant alignments: (Bits) Value seq49779 113 5e-22 >seq49779 Length=5410 Score = 113 bits (124), Expect = 5e-22 Identities = 120/156 (77%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 878 AATTCCTCGAACCCTCCTTTAATCTGAACTTTATACGGATAACGATC-CATAATTTTAAG 936 ||||| || || || ||||||| | | || |||| ||||| | || |||| |||||| Sbjct 5127 AATTCTTCAAATCCACCTTTAACCGGTACCTTATGTGGATATCTGTCACATATTTTTAAT 5068 Query 937 CATTTCATCATACTTTATCCATCCATAGAAATCATCTATGATGACGCATGTTTGCTGAGC 996 | | ||||||| ||||||||||| |||||||| || ||||||||| | || |||| | Sbjct 5067 AACT-CATCATATTTTATCCATCCGTAGAAATCGTCAATGATGACGGCTTCTTCCTGATC 5009 Query 997 GTAGCCGTCCCACCAGAGACCTCTAGGTTTGTAGTA 1032 ||||||||||||||| | ||||| || || || || Sbjct 5008 GTAGCCGTCCCACCATGGTCCTCTCGGCTTATAATA 4973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5607619408170