Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_001270.2 Length=6825 Score E Sequences producing significant alignments: (Bits) Value seq187475 156 2e-34 seq68330 152 2e-33 seq93364 150 8e-33 >seq187475 Length=2539 Score = 156 bits (172), Expect = 2e-34 Identities = 299/434 (69%), Gaps = 14/434 (3%) Strand=Plus/Plus Query 2573 TTATGTTAAAAATATTGTTTTACCACTAGAATTAGTtaataataatcctcgtaataaaat 2632 ||||||||||||| |||||||||| | || || ||| || ||| | | |||||| | Sbjct 183 TTATGTTAAAAATGTTGTTTTACCTATTGA--TA-TTATTAGAAATGATAGAAATAAATT 239 Query 2633 gggagttaaaaatactggaaaaaatgataaaaaatTGTGGAATAGTCGTATTCGCTCGCA 2692 || | || |||| ||| || | | |||| || | |||| | | |||| | | Sbjct 240 AGGTATAAAGAATATTGGTAATATTACTAAA---TTAAGAAATAATAATGTTCGTACTAA 296 Query 2693 AGGAAATTGTATTCGGAAAGCATATGAAAATTTTTGAAATTGTAAAAATTTAAGTTTTTT 2752 | || | |||| ||||||| | ||||||| ||| | | |||||||||||| Sbjct 297 ATCTAAATTAATTCAAAAAGCATTACATAATTTTTATAATGCAAGAGTTTTAAGTTTTTT 356 Query 2753 GACTTTAACTTATGCCGTTAATGAGAAAGATGTTAAAAAATGTAAAAATGATTTAAAGTT 2812 |||||||||||| | ||||| | ||| ||| |||| ||| |||| ||| | || Sbjct 357 AACTTTAACTTATCACAAAAATGAAACTGATATTAGAAAAGCAAAACATGACTTACAATT 416 Query 2813 ATTTTTTAATAATATAAATCGTTGATGAAACAATCCTATTCGTTCTAAAAATCATAAAGG 2872 ||| ||||| | |||| ||||||||||| | |||| || |||||| ||| ||| Sbjct 417 ATTCTTTAAACGTTTAAAACGTTGATGAAATGACCCTAAACGCTCTAAA---CATTTAGG 473 Query 2873 AATTTTAAAATATATGTATACTTATGAGTATCAAAAACGCGGAGCAGTTCACTTTCATAT 2932 |||| |||| | ||| |||||| ||||||||||| || || ||||| ||||| || Sbjct 474 TGAATTAAGATATTTTTATGTTTATGAATATCAAAAACGTGGTGCTGTTCATTTTCACAT 533 Query 2933 CATATTAAACCAAAAAATACCTAACAGTGTTGT-ACAACAATACTGAAAACA---CGGTA 2988 |||| || | |||||||| | ||| | | || || || |||| ||| |||| Sbjct 534 ATTATTTAATCGTAAAATACCATATAGTATGATAACTAC-ATGATGAACACATGCTGGTA 592 Query 2989 TTAATAAAAATATT 3002 ||||||| |||| Sbjct 593 ATAATAAAGGTATT 606 >seq68330 Length=2554 Score = 152 bits (168), Expect = 2e-33 Identities = 265/382 (69%), Gaps = 9/382 (2%) Strand=Plus/Plus Query 2573 TTATGTTAAAAATATTGTTTTACCACTAGAATTAGTtaataataatcctcgtaataaaat 2632 ||||||||||||| | |||||||| | || | ||||||| | | ||||||| Sbjct 1884 TTATGTTAAAAATGTAGTTTTACCTATTTCTTTTTTAAATAATATTG---GAAATAAAAA 1940 Query 2633 gggagttaaaaatactggaaaaaatgataaaaaatTGTGGAATAGTCGTATTCGCTCGCA 2692 || |||| | || ||| | ||||||| | |||| | | |||| | | Sbjct 1941 AGG---TAAATGTTATGTTGGTAATAAACAAAAATTAAGAAATAATACTGTTCGTACTAA 1997 Query 2693 AGGAAATTGTATTCGGAAAGCATATGAAAATTTTTGAAATTGTAAAAATTTAAGTTTTTT 2752 | |||| |||| ||||||| | ||||||| ||| |||||| ||||||||| | Sbjct 1998 AACTAATTTAATTCAAAAAGCATTACATAATTTTTATAATAGTAAAATGTTAAGTTTTGT 2057 Query 2753 GACTTTAACTTATGCCGTTAATGAGAAAGATGTTAAAAAATGTAAAAATGATTTAAAGTT 2812 |||||||||||| | |||| | ||||| |||||||| ||||| ||| | || Sbjct 2058 TACTTTAACTTATAAAGATAATATGCAAGATATTAAAAAAGCAAAAAAAGATATTCGTTT 2117 Query 2813 ATTTTTTAATAATATAAATCGTTGATGAAACAATCCTATTCGTTCTAAAAATCATAAAGG 2872 ||||||| ||| |||| |||||||| | |||| ||||||||| || || | Sbjct 2118 ATTTTTTCTTAAATTAAAAAAATGATGAAATGACCCTAAACGTTCTAAATAT-TTAGGTG 2176 Query 2873 AATTTTAAAATATATGTATACTTATGAGTATCAAAAACGCGGAGCAGTTCACTTTCATAT 2932 || ||||||||| | ||| |||||| |||||| | || |||||||| || |||||||| Sbjct 2177 AA--TTAAAATATTTTTATGTTTATGAATATCAAGACCGTGGAGCAGTACATTTTCATAT 2234 Query 2933 CATATTAAACCAAAAAATACCT 2954 || || || |||||||||| Sbjct 2235 AATTTTTAATAGAAAAATACCT 2256 >seq93364 Length=1195 Score = 150 bits (166), Expect = 8e-33 Identities = 204/282 (72%), Gaps = 3/282 (1%) Strand=Plus/Minus Query 2712 GCATATGAAAATTTTTGAAATTGTAAAAATTTAAGTTTTTTGACTTTAACTTATGCCGTT 2771 || ||| | ||||||| ||| ||| |||||||||| | |||||||| ||| | | Sbjct 906 GCTTATCATAATTTTTATAATGCAAAAGTTTTAAGTTTTGTTACTTTAACATATAAAGAT 847 Query 2772 AATGAGAAAGATGTTAAAAAATGTAAAAATGATTTAAAGTTATTTTTTAATAATATAAAT 2831 ||| | ||||| |||||||| ||| ||||| | || ||||||||||| | |||| Sbjct 846 AATATGCAAGATATTAAAAAAGCAAAACATGATATTAATTTATTTTTTAAGCGTTTAAAG 787 Query 2832 CGTTGATGAAACAATCCTATTCGTTCTAAAAATCATAAAGGAATTTTAAAATATATGTAT 2891 ||||||||||| |||||| ||| |||| || || ||| ||||||||||||||| Sbjct 786 CGTTGATGAAATGATCCTAAACGTGCTAAGTAT-TTAGGTGAA--TTAAAATATATGTAT 730 Query 2892 ACTTATGAGTATCAAAAACGCGGAGCAGTTCACTTTCATATCATATTAAACCAAAAAATA 2951 |||||| |||||||| || || || || || |||||||| | || || | ||| || Sbjct 729 GTTTATGAATATCAAAAGCGTGGTGCTGTACATTTTCATATACTTTTTAATCGTAAAGTA 670 Query 2952 CCTAACAGTGTTGTACAACAATACTGAAAACACGGTATTAAT 2993 | | | || |||| |||| ||| ||| ||||||||| Sbjct 669 CATTATAGCATTGTTTCTCAATTTTGATTACATGGTATTAAT 628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 21674815471536