Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_002014.1 Length=6883 Score E Sequences producing significant alignments: (Bits) Value seq57125 102 4e-18 >seq57125 Length=1652 Score = 102 bits (112), Expect = 4e-18 Identities = 100/126 (79%), Gaps = 5/126 (4%) Strand=Plus/Minus Query 6335 CGTCAAACGCTAAATCGTGGGGGCCCCTTTGGG--CCGATTTAGTGATTTACGACAC-TC 6391 |||||| | |||||||| ||| ||| || ||| ||||||||||| |||||| ||| || Sbjct 1313 CGTCAAGCTCTAAATCGGGGGCTCCCTTTAGGGTTCCGATTTAGTGCTTTACGGCACCTC 1254 Query 6392 CATA--AATATCCTTGTTATGGGTGATGGTTCACGTAGTGGGCCATCGCCTTGTTAGACG 6449 | || | |||| | |||||||||||||||||||||||||||||| || |||||| Sbjct 1253 GACCCCAAAAAACTTGATTAGGGTGATGGTTCACGTAGTGGGCCATCGCCCTGATAGACG 1194 Query 6450 TTTTTT 6455 ||||| Sbjct 1193 GTTTTT 1188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 21819323177936