Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_001270.2 Length=6825 Score E Sequences producing significant alignments: (Bits) Value seq11300 134 6e-28 >seq11300 Length=5173 Score = 134 bits (148), Expect = 6e-28 Identities = 257/376 (68%), Gaps = 37/376 (10%) Strand=Plus/Plus Query 2634 GGAGTTaaaaatactggaaaaaatgataaaaaaTTGTGGAATAGTCGTATTCGCTCGCAA 2693 ||| |||| |||| ||| ||||| ||||| || || | | | | ||||||| | ||| Sbjct 1736 GGAATTAAGAATAATGGTAAAAACGATAAGAAGTTATTTCACAATGGTATTCGTGC-CAA 1794 Query 2694 G-GAAATTGTATTCGGAAAGCATATGAAAATTTTTGAAATTGTAAAAATTTAAGTTTTTT 2752 | | |||| |||||| || | ||| | |||||| ||||| |||| | ||||||||| | Sbjct 1795 GAGCAATTTTATTCGTAAGGTTTATCACAATTTTGGAAATAGTAAGAGATTAAGTTTTCT 1854 Query 2753 GACTTTAACTTATGCCGTTAATGAGAAAGATGTTAAAAAATGTAAAAATGATTTAAAGTT 2812 || ||||||||||| ||||||| ||||||||| || |||||||| ||||| || | Sbjct 1855 TACATTAACTTATGCGTTTAATGAATTAGATGTTAAGAAGTGTAAAAAAGATTT--AGCT 1912 Query 2813 A--TTTTTTAATAATATAAATCGTTGATGAAACAATCCTATTCGTTCTAAAAATCATAAA 2870 | |||||||| |||| | || ||| ||| |||||| Sbjct 1913 AAGTTTTTTAA------AAATGTTAGA-----------TATAAGTT-------TCATAA- 1947 Query 2871 GGAATTTTAAAATATATGTATACTTATGAGTATCAAAAACGCGGAGCAGTTCACTTTCAT 2930 |||||| || | ||||| || || || |||||| | || || || ||||||||| Sbjct 1948 -----TTTAAAGTACGTTTATACATACGAATACCAAAAATGTGGTGCTGTGCACTTTCAT 2002 Query 2931 ATCATATTAAACCAAAAAATACCTAACAGTGTTGTACAACAATACTGAAAACACGGTATT 2990 || || | | ||||| |||| || | | ||| |||| | ||| || || ||| Sbjct 2003 ATATTAATGGATGAAAAATTACCGAATAAATTAGTATTACAAAATTGACCGCATGGCATT 2062 Query 2991 AATAAAAATATTAAAG 3006 ||||||||| |||||| Sbjct 2063 AATAAAAAT-TTAAAG 2077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 21715804955184