Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_004284.1 Length=5908 Score E Sequences producing significant alignments: (Bits) Value seq27214 84.2 8e-13 >seq27214 Length=1010 Score = 84.2 bits (92), Expect = 8e-13 Identities = 168/245 (69%), Gaps = 7/245 (3%) Strand=Plus/Plus Query 3070 TGGTTTCAATTCATAATCCTTTAAGAATGGCGCAGCATTCCACTTGTATTGAATAATTCT 3129 ||||||| |||||||||||||| || || || | |||||| ||||| || |||| ||| Sbjct 745 TGGTTTCTTATCATAATCCTTTAAAAAAGGTGCGGAATTCCAATTGTACTGCATAACTCT 804 Query 3130 ATCACTAAAAGCAGTTTCATACATAAAAGGTACAGTATTATTAGTAAGTATTATAACTGG 3189 || ||| ||| | | || |||| | | || |||| |||||| |||| ||| Sbjct 805 GTCTGCAAATGCATTGTGATTAGCAAAATGAGGACGATGATTACTAAGTACAATAATTGG 864 Query 3190 AGTGCGTTTTACATGTGCAT---CCATACGATTTTTAACTCTAACAGTATAAGGATCTCC 3246 ||| |||||||||| ||| | | ||| ||||| || || | | || ||| || Sbjct 865 AGTACGTTTTACATTTGCTTGTGGCTTAC-ATTTT--ACATTAGCTGACAAATTATCACC 921 Query 3247 TCCAAACATCATTTTAATTGTATCAGTTAAAGAACTCTCATAGTTAGGTTCATTCCATAA 3306 |||| | ||| || | | || ||| | |||||||| ||||||||||| || Sbjct 922 CGCAAAAAGCATCTTCAAGTTTTCCGTTTCTCTAGGTTCATAGTTCGGTTCATTCCA-AA 980 Query 3307 TAATA 3311 ||||| Sbjct 981 TAATA 985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 18786034753780