Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_031450.1 Length=5166 Score E Sequences producing significant alignments: (Bits) Value seq27214 253 7e-64 seq30606 91.5 5e-15 >seq27214 Length=1010 Score = 253 bits (280), Expect = 7e-64 Identities = 251/317 (79%), Gaps = 11/317 (3%) Strand=Plus/Minus Query 2161 ATCAGGATTGTCACAATAGACGACTTCTTATTTGGAATGAACCAAACTACGAACCTAGGG 2220 |||| |||||||| |||||| || || |||||||||||||||| ||||| |||||||| | Sbjct 1010 ATCAAGATTGTCATAATAGAAGAATTATTATTTGGAATGAACCGAACTATGAACCTAGAG 951 Query 2221 AAACGGAGAATTTGAAGATGTTATTTGGAGGGGATAACTTGTCTGCTAATGTTAAGTGTA 2280 ||||||| || ||||||||| | |||| || ||||| ||||| |||||||| || |||| Sbjct 950 AAACGGAAAACTTGAAGATGCTTTTTGCGGGTGATAATTTGTCAGCTAATGTAAAATGTA 891 Query 2281 AACCTCAAGCTAATGTAAAGCGTACTCCAGTAATATGTA-TGAGTAAT-GTTGTACCCAG 2338 | || ||||| |||||||| ||||||||| | || |||| | |||||| | || | || Sbjct 890 AGCCACAAGCAAATGTAAAACGTACTCCAATTAT-TGTACTTAGTAATCATCGTCCTCA- 833 Query 2339 ATTTGCTAATCATGAAGCATTTGCTGACAGAGTTATTACATATTATTGGAATGCTGCTCC 2398 ||||||||||| | |||||||| ||||||||||| || |||||||| | || || Sbjct 832 TTTTGCTAATCACAATGCATTTGCAGACAGAGTTATGCAGTACAATTGGAATTCCGCACC 773 Query 2399 TTTCTTAAAAGA-GGTAATAAAAAAGCCACGACCTGATTCTGTAATGAATTTATTATATG 2457 ||| ||||| || | |||| ||| ||| |||||||| || ||||||||||||| |||| Sbjct 772 TTTTTTAAAGGATTATGATAAGAAA-CCAAGACCTGATGCTATAATGAATTTATTGTATG 714 Query 2458 -----AAATATACAATT 2469 ||| |||||||| Sbjct 713 CATTAAAAGATACAATT 697 >seq30606 Length=776 Score = 91.5 bits (100), Expect = 5e-15 Identities = 118/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 4378 CGAATTGTGAGATTGCTTCTCTATCCGCTGACAGCACGTCGCTATTGCTCTTAGCTTGTT 4437 ||||||| |||||||||||| || || |||| |||||| || | |||| | | Sbjct 4 CGAATTGACCGATTGCTTCTCTGTCTGCCGACAACACGTCAGAATCCTTTGTAGCGTCCT 63 Query 4438 GATAATGTAAGTCGTGACCCTGCGCAATAAGGTCAGCTCTGTTGGTCGCGGGACGTATTG 4497 ||||||| ||||| ||||||||||||| ||||||||| | ||||| ||| Sbjct 64 TGTAATGTATATCGTGGCCCTGCGCAATAACGTCAGCTCTCGTACGGGCGGGCTGTAAAC 123 Query 4498 AATTTCCAGGTCCGATATTGTTCGAAAACGGTAAAACTAGTCC 4540 ||||||||||| || ||||| || || ||||| || | ||| Sbjct 124 TGTTTCCAGGTCCAATGTTGTTAGAGAAGGGTAACACAAATCC 166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16412590553660