Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ligia_20exotica_20[genbank_20GCA_5F002091915.1_202017-03-31] 1,663,556 sequences; 953,555,114 total letters Query= NC_002190.2 Length=3909 Score E Sequences producing significant alignments: (Bits) Value seq1654179 159 8e-36 seq1602588 127 5e-26 seq1621109 107 5e-20 seq1329816 95.1 3e-16 seq1451101 93.3 1e-15 >seq1654179 Length=2675 Score = 159 bits (176), Expect = 8e-36 Identities = 281/403 (70%), Gaps = 10/403 (2%) Strand=Plus/Minus Query 2049 TCTTAGCTTGGATAATCATCGTAGCAGACAAAAAACTGGACAAAATAAACACTCTTGTAC 2108 |||| || ||| || |||| ||| |||||||| | | ||||||||| | || ||| Sbjct 1867 TCTTCGCATGGGTAGACATCATAGTCCACAAAAAATTACATAAAATAAACTCACTAGTAT 1808 Query 2109 TCCAAGGACCAACAGGAACAGGAAAATCTCTTACCATCGGTGCACTACTCGGAAAACTGA 2168 | |||||||||||| ||||||||| | ||| | | ||||| |||| | Sbjct 1807 TACAAGGACCAACAAATACAGGAAAAACACTTCTCTTAAAAAACCTACTTTCAAAATT-- 1750 Query 2169 ACAC-TGGCCTA-GTAACAAGAACAGGAGACTCAAACACCTTCCATCTACAAAAC---CT 2223 |||| |||| || || |||||| |||||||| ||| |||||||||||| || Sbjct 1749 ACACGTGGCATACGTCACAAGATCAGGAGACCAAAATCAATTCCATCTACAAGGATTACT 1690 Query 2224 CATCGGAAAGTCCTACGCTCTCTTCGAAGAACCCAGAATCAGTCAAATAACAGTGGACGA 2283 | | ||||| | || | ||||||||||||||||||||| | | || ||||| Sbjct 1689 AAACA-AAAGTGTT--GCAATATTCGAAGAACCCAGAATCAGTGTACAATTGGTAGACGA 1633 Query 2284 CTTCAAACTCCTTTTCGAAGGATCAGACTTAGAAGTAAACATAAAACACCAAGAGTCAGA 2343 || |||||| || || | |||| | | ||| ||||| | ||||||||||| |||| Sbjct 1632 CTACAAACTACTCTTAGGAGGAGAAACAATGGAAATAAACGTTAAACACCAAGATCCAGA 1573 Query 2344 AATTATGGGACGAATACCAATCTTCATATCAACAAACAAAGATATAGACTACTGGGTACC 2403 || | | |||| || |||||||||||||| || |||| ||||||| ||||| || Sbjct 1572 AAGACTAGACAGAATTCCTATCTTCATATCAACCAATAAAGCATTAGACTATTGGGTGCC 1513 Query 2404 TCCAGCTGATGGTAAAGCTCTACAAACAAGAACAAAAACCTTC 2446 | | || || |||| || || || |||||||||| ||| Sbjct 1512 ACATGACGACGGAGAAGCATTAAAAGCACGAACAAAAACATTC 1470 Score = 87.8 bits (96), Expect = 4e-14 Identities = 119/163 (73%), Gaps = 6/163 (4%) Strand=Plus/Minus Query 1257 AAGGGACTCCCAACGGACCGGACGAAATGGACGGAAGGCGACTGGAAGAGAGTGAGATTG 1316 ||||| || ||||||||| ||||||||||||| | | |||||| |||| | | ||| Sbjct 2669 AAGGGCCTTCCAACGGACAGGACGAAATGGACAGCCGCAGACTGGCAGAGGATAAAATTA 2610 Query 1317 ATAAACAAGTGGAAAGTACAACATGGTACACCTTCGTCATCAGAGAAAAACCACAACCAA 1376 || ||||| |||||| | | || | |||||| ||||||||||| ||||| |||| | Sbjct 2609 ATCAACAACTGGAAAAAAAACAATACTGGACCTTCATCATCAGAGAACAACCA-AACCCA 2551 Query 1377 GAAGACTCTCCGGACGAACGCCAAACTTCACCATTACAGATCA 1419 | ||| ||| | | ||||||||| | || ||||| || Sbjct 2550 G--GAC---AAGGAAAATCACCAAACTTCTCAATCACAGAACA 2513 >seq1602588 Length=1469 Score = 127 bits (140), Expect = 5e-26 Identities = 272/400 (68%), Gaps = 6/400 (2%) Strand=Plus/Plus Query 2049 TCTTAGCTTGGATAATCATCGTAGCAGACAAAAAACTGGACAAAATAAACACTCTTGTAC 2108 |||| || ||||| || ||| | |||||||||| ||||||||||| | | || | Sbjct 115 TCTTCGCCTGGATTGATATAATAGTACACAAAAAACTACACAAAATAAACTCATTAGTTC 174 Query 2109 TCCAAGGACCAACAGGAACAGGAAAATCTCTTACCATCGGTGCACT-ACTCGGAAAACTG 2167 | ||||| |||||| ||||||||| | || || | ||| ||| |||| | Sbjct 175 TACAAGGCCCAACAAACACAGGAAAAACACT-ACTACTCAAAAACTTACTATCAAAATT- 232 Query 2168 AACAC-TGGCCTA-GTAACAAGAACAGGAGACTCAAACACCTTCCATCTACAAAACCTCA 2225 |||| | ||||| || ||| | | |||||| ||| |||||| ||||| || Sbjct 233 -ACACGTAGCCTATGTCACACGCTCCGGAGACCAAAATCAATTCCATTTACAAGGACTAT 291 Query 2226 TCGGAAAGTCCTACGCTCTCTTCGAAGAACCCAGAATCAGTCAAATAACAGTGGACGACT 2285 | || | ||| | || ||||| |||||||||||| | | ||| ||||||| Sbjct 292 TAAACAAAAGCGTCGCAATATTTGAAGAGCCCAGAATCAGTGTACAATTAGTAGACGACT 351 Query 2286 TCAAACTCCTTTTCGAAGGATCAGACTTAGAAGTAAACATAAAACACCAAGAGTCAGAAA 2345 |||||| || || | |||| | | ||| ||||| ||||||| ||||| |||||| Sbjct 352 ACAAACTACTCTTAGGAGGAGAAACAATGGAAATAAACGTAAAACATCAAGACCCAGAAA 411 Query 2346 TTATGGGACGAATACCAATCTTCATATCAACAAACAAAGATATAGACTACTGGGTACCTC 2405 | | |||| || || ||||||||||| || |||| ||||||| ||||| || | Sbjct 412 GACTAGACAGAATCCCTATATTCATATCAACCAATAAAGCATTAGACTATTGGGTTCCAC 471 Query 2406 CAGCTGATGGTAAAGCTCTACAAACAAGAACAAAAACCTT 2445 | || || |||| ||| || || |||||||||| || Sbjct 472 ATGACGACGGAGAAGCACTAAAAGCACGAACAAAAACATT 511 >seq1621109 Length=1671 Score = 107 bits (118), Expect = 5e-20 Identities = 278/411 (68%), Gaps = 21/411 (5%) Strand=Plus/Plus Query 2063 ATCATCGTAGCAGACAAAAAACTGGACAAAATAAACACTCTTGTACTCCAAGGACCAACA 2122 ||||||||| | |||||||| |||||||||| | | | |||||||||||| ||| Sbjct 658 ATCATCGTAC---ATAAAAAACTCCACAAAATAAATGCATTCGAACTCCAAGGACCTACA 714 Query 2123 GGAACAGGAAAATCTCT--TACCATCGGTGCACTACTCGGAAAACTGAACACTG-GCCTA 2179 ||||| ||||| || ||| | || ||||| |||||| ||||| || || Sbjct 715 AACACAGGCAAATCACTAATACTAAAAA-GC-CTACTATCAAAACT--ACACTTAGCATA 770 Query 2180 G-TAACAAGAACAGGAGACTCAAACACCTTCCATCTACAAAACCTCATCGG--AAAGTCC 2236 ||||||||| |||||| ||| || ||| ||||| || | ||||| Sbjct 771 CATAACAAGAAGTGGAGACCAAAATCAATTTCATTTACAAGGACTACTAAATAAAAGTG- 829 Query 2237 TACGCTCTCTTCGAAGAACCCAGAATCAGT---CAAATAACAGTGGACGACTTCAAACTC 2293 || || |||| ||| |||| |||| ||| ||| || || ||||||| |||| | Sbjct 830 TA-GCAATCTTTGAAAAACCACGAATAAGTGTCCAACTA---GTAGACGACTACAAATTA 885 Query 2294 CTTTTCGAAGGATCAGACTTAGAAGTAAACATAAAACACCAAGAGTCAGAAATTATGGGA 2353 || | | |||| | | ||| ||||| | ||||| ||||| |||||| | | Sbjct 886 CTACTTGGAGGAGAAATAATGGAAATAAACGTTAAACATCAAGACCCAGAAAGACTAGAT 945 Query 2354 CGAATACCAATCTTCATATCAACAAACAAAGATATAGACTACTGGGTACCTCCAGCTGAT 2413 ||||||| || || ||||||||||||||| ||||||| |||||||| | ||| Sbjct 946 AGAATACCTATATTTATATCAACAAACAAACCATTAGACTATTGGGTACCATACGACGAT 1005 Query 2414 GGTAAAGCTCTACAAACAAGAACAAAAACCTTCCACCTGACAAGACAAATA 2464 || || | || || || |||||||||| ||| | ||| ||||||| Sbjct 1006 GGAGAAACACTTAAAGCACGAACAAAAACATTCACATTCACACAACAAATA 1056 >seq1329816 Length=682 Score = 95.1 bits (104), Expect = 3e-16 Identities = 130/182 (71%), Gaps = 6/182 (3%) Strand=Plus/Plus Query 1238 ACACAACCCGACTTTATTGAAGGGACTCCCAACGGACCGGACGAAATGGACGGAAGGCGA 1297 ||||| ||||| |||| || ||||| ||||||||| ||||||||||||| | | || Sbjct 409 ACACATTCCGACATTATACAAAGGACTACCAACGGACAGGACGAAATGGACAGCCGCAGA 468 Query 1298 CTGGAAGAGAGTGAGATTGATAAACAAGTGGAAAGTACAACATGGTACACCTTCGTCATC 1357 |||| ||||||||| || |||||||| |||||| | | || | |||||| || || Sbjct 469 CTGGCAGAGAGTGAAATAAATAAACAATTGGAAAAGAAACAATACTGGACCTTCATCCTC 528 Query 1358 AGAGAAAAACCACAACCAAGAAGACTCTCCGGACGAACGCCAAACTTCACCATTACAGAT 1417 || || ||||| | || ||| | ||| | | ||||||||| | | ||||| Sbjct 529 CGAAAAGAACCAAGAGCAGGAA------CAGGAAAACCACCAAACTTCTCACTCACAGAA 582 Query 1418 CA 1419 || Sbjct 583 CA 584 >seq1451101 Length=854 Score = 93.3 bits (102), Expect = 1e-15 Identities = 126/176 (72%), Gaps = 6/176 (3%) Strand=Plus/Plus Query 1244 CCCGACTTTATTGAAGGGACTCCCAACGGACCGGACGAAATGGACGGAAGGCGACTGGAA 1303 |||||| | | |||||||| ||||||||| ||||||||||||| | | |||||| | Sbjct 91 CCCGACACTTTACAAGGGACTTCCAACGGACAGGACGAAATGGACAGCCGCAGACTGGCA 150 Query 1304 GAGAGTGAGATTGATAAACAAGTGGAAAGTACAACATGGTACACCTTCGTCATCAGAGAA 1363 ||| | | ||| || ||||| |||||| | | || | ||||| ||||||||||| Sbjct 151 GAGGATAAAATTAATCAACAACTGGAAAAAAAACAATACTGGACCTTTATCATCAGAGAA 210 Query 1364 AAACCACAACCAAGAAGACTCTCCGGACGAACGCCAAACTTCACCATTACAGATCA 1419 ||||| | ||| ||| | ||| | | ||||||||| | || ||||| || Sbjct 211 CAACCAAACCCAGGAAAA------GGAAAATCACCAAACTTCTCAATCACAGAACA 260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 12171238441960