Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_005131.2
Length=7118
Score E
Sequences producing significant alignments: (Bits) Value
seq15681 174 7e-40
>seq15681
Length=7133
Score = 174 bits (192), Expect = 7e-40
Identities = 337/498 (68%), Gaps = 9/498 (2%)
Strand=Plus/Plus
Query 1 GAATTCGGCGGGGTCGATCCAGCGTCGTGAGCGGTCTTTCATGGGCAATAAAAAA-CCAC 59
|||||| | |||| | ||| | |||||| |||| | ||| |||||||||||| ||||
Sbjct 5265 GAATTCTTCTGGGTTGGCCCATCTACGTGAGGGGTCGTGCATAGGCAATAAAAAAGCCAC 5324
Query 60 CAGTTTTTACGCTGGTGGTTGTCTTTGTAGACCCCTCGGCTCG--GTGGTCTTGCTCGGT 117
|||| | |||||||| | || ||| ||| | || ||| ||| ||| |
Sbjct 5325 CAGTGTCAGTGCTGGTGGCTAGTGTTACAGAGCCCGCTTTACGATGTGATCTAT-TCGAT 5383
Query 118 TCAGGTTTCGCATAATTTGCATTATGAAAACCTGAACCTTCAGCTCATCGAATCACGCGT 177
| | || ||||||| |||||||||| |||| ||| |||||||||||||||||
Sbjct 5384 TTAAATT-CGCATAACAACTGTTATGAAAACTTGAATCTTTAGCTCATCGAATCACGCTG 5442
Query 178 AGCGCAAGGCCCCGCGCGGGTTCAGCCATTCGATGAGCGGCTTAAAAGATNNNNNNNNNN 237
| || || ||| |||||| |||||||||| |||||||||||||||||||
Sbjct 5443 GGAGCCAGTCCCGGCGCGGATTCAGCCATTTGATGAGCGGCTTAAAAGATTTGGAAATTT 5502
Query 238 NNNNNNNNNNNNNTTCTTTTCTGGCGCGTGCTTCGTTCGCCAAAATTTTAAAAGCTTCTG 297
|||||||| | |||| |||| | || ||||||| ||||||||| |
Sbjct 5503 TTTCCCTTTTTTGTTCTTTTCGTGTGCGTTCTTCTTCAGCGAAAATTTCAAAAGCTTCCG 5562
Query 298 AGTCGTCAATTCCTGCTTCATGCGCAAGGATTAGCGCATCGTCATAATCCGGAAGGCGCT 357
||| ||||| ||||| | || || ||||| |||||| |||| ||| |||| ||
Sbjct 5563 CCGCGTTTATTCCAGCTTCTTTTGCGAGAATTAGGGCATCGCAGTAATTCGGCAGGCTCT 5622
Query 358 --CTGCCTTTGAATATCGGTCTAGGCTGCGTTGGTGGATTCCCAGTTCTTTCGCAGCTCT 415
|| |||| ||||| | || || | | ||| | ||||||||||||| |
Sbjct 5623 TGTTGTTTTTG--TATCGATTTAAATAAACCTGCCGCAGTCCTATTTCTTTCGCAGCTTT 5680
Query 416 GTGTACCGATCGCCCGTGTAGGGCTTTAGCTATCAGTTCTTGGTAGCTCATAAAAATTTC 475
| || || || | ||| || || |||||||||| | |||| ||||||||| ||
Sbjct 5681 ATTGACGCTACGGCCATTTAGCGCCTTCTCTATCAGTTCCTTGTAGGTCATAAAAAACTC 5740
Query 476 CAATTTCCAAGTTGAGAC 493
| ||| || | | ||||
Sbjct 5741 CTATTGTCATGCTTAGAC 5758
Score = 145 bits (160), Expect = 3e-31
Identities = 155/205 (76%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 6914 TGAGGTCTAGCTGCAGCTGCTGTCGCTTGTGGAGTGGGTACAGCGTGCGTCGGTACGCCT 6973
|||| | || || |||||| | |||||||| |||||||| || || | | | ||||
Sbjct 5060 TGAGCTGGAGTTGGAGCTGCCGCTTCTTGTGGATCGGGTACAGGGTTCGCCTGAAGGCCT 5119
Query 6974 CGGCCTTGATCTCGTCAAGTTGCAGAACTGCAACGCTCCATGCAGGAATTGGTCGTGCGC 7033
||| | | ||||| ||| | | |||||||||| ||||||| || || || |||||||
Sbjct 5120 CGGTTTCCAGCTCGTGGAGTCGTAAAACTGCAACGGTCCATGCGGGTATCGGGCGTGCGC 5179
Query 7034 CTCGCTGCCAATCTCGGATGGTTCGTGGTGTTCGCCGAAGCTTCGTGGATAGGATTTTGA 7093
|||| |||| || ||||| ||||| ||||| ||| | ||||| |||| || |||| |
Sbjct 5180 CTCGGAGCCAGTCGCGGATCGTTCGGGGTGTCCGCTGCAGCTTTTTGGACAGTGTTTTTA 5239
Query 7094 TGGTGTAGACCTTCGCCCAATAGTC 7118
|||||||||||| |||||||| ||
Sbjct 5240 CGGTGTAGACCTTGGCCCAATATTC 5264
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 22654483995352
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |