Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Locusta_20migratoria_20[genbank_20GCA_5F000516895.1_202013-12-18] 1,397,492 sequences; 5,759,798,599 total letters Query= NC_001899.1 Length=5941 Score E Sequences producing significant alignments: (Bits) Value seq235213 80.6 1e-11 >seq235213 Length=11231 Score = 80.6 bits (88), Expect = 1e-11 Identities = 108/148 (73%), Gaps = 7/148 (5%) Strand=Plus/Minus Query 3906 TATT-TGATTTAAAGTAGCCTGCTTAGTAGCTGTAGAACTAGTTTCAAAAGCTATACGA- 3963 |||| |||||||||||||| || |||||| | |||| | |||||||| | |||||| Sbjct 1388 TATTCTGATTTAAAGTAGCTAACTGAGTAGCAGAAGAATTTGTTTCAAATGTAATACGAG 1329 Query 3964 --TTAGATCGAAATATAACTTTAACATTACATTCAACAATTCTAGAACCAGGAGGTAATA 4021 ||| || ||||||||||||| | || | |||| | ||||||| |||||||| Sbjct 1328 GGTTAT---GAGCTATAACTTTAACACTTCAGTGCACAAAACGAGAACCATCAGGTAATA 1272 Query 4022 AGTCAAATTCAGATTGATTCATATATAA 4049 | || |||| | | |||| | ||| || Sbjct 1271 AATCGTATTCTGCTGGATTTAAATACAA 1244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 18610324428680