Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Locusta_20migratoria_20[genbank_20GCA_5F000516895.1_202013-12-18] 1,397,492 sequences; 5,759,798,599 total letters Query= NC_004290.1 Length=5234 Score E Sequences producing significant alignments: (Bits) Value seq1036822 113 1e-21 seq893251 104 8e-19 seq447257 93.3 1e-15 seq353188 87.8 6e-14 seq731020 86.0 2e-13 seq487092 86.0 2e-13 seq369727 86.0 2e-13 seq1026985 84.2 7e-13 seq1006908 84.2 7e-13 seq130590 80.6 9e-12 seq796784 78.8 3e-11 seq474457 78.8 3e-11 >seq1036822 Length=8051 Score = 113 bits (124), Expect = 1e-21 Identities = 183/263 (70%), Gaps = 8/263 (3%) Strand=Plus/Minus Query 2029 AAAGTTAATACTGTATGTATAATTGGTAATCATAATTGTGGTAAGAATTATTTTTGGGAC 2088 ||| | |||||| |||||||||||||| | ||||| || || | || |||| ||| Sbjct 7642 AAATTAAATACTTTATGTATAATTGGTCCCCCTAATTCAGGAAAAATTTGGTTTTTTGAC 7583 Query 2089 GCAGTTTGCTGTTTGGGTT----TAAATGTGGGTTTTCTTGGTAGAGTTAATAATAAAAC 2144 ||| | ||| || ||||||||||| | | || | ||||||||||| Sbjct 7582 ----TTTATTATTTCACTTGCTCTAAATGTGGGTCATATAGGACGTTGCAATAATAAAAC 7527 Query 2145 TAACAAGTTTGCTTTGCAAGATTGTGTTCACAAACGAATTGTAATTGGTAATGAAATATC 2204 || | ||| |||| |||||| ||| | | ||||||| |||||||||||||||| || Sbjct 7526 AAATCAATTTTCTTTACAAGATGCTGTCAATAGACGAATTATAATTGGTAATGAAATTTC 7467 Query 2205 TTTGGAAGATGGAGCAAAGGAGGATATGAAGAAATTATGTGAGGGGTGTCCATTCAATGT 2264 | |||||||||||| |||||| | || || || |||||||| | ||| ||| | Sbjct 7466 AGTTGAAGATGGAGCATTAGAGGATTTTAAAAATTTTTGTGAGGGTGTTGCATGTAATAT 7407 Query 2265 TAGCGTAAAACATCAATCAGATG 2287 | || ||| | ||| ||||| Sbjct 7406 ATGTGTTAAATACAAATGAGATG 7384 >seq893251 Length=19828 Score = 104 bits (114), Expect = 8e-19 Identities = 156/217 (72%), Gaps = 16/217 (7%) Strand=Plus/Plus Query 2029 AAAGTTAATACTGTATGTATAATTGGTAATCATAATTGTGGTAAGAATTATTTTTGGGAC 2088 ||| | |||||| | ||| ||| ||| || ||||| |||||| |||| |||| || Sbjct 18987 AAATTAAATACTTTGTGTGCAATAGGTCCTCCTAATTCTGGTAAAAATTGGTTTTTTGAT 19046 Query 2089 GCAGTTTGCTGTTTGGGTT----TAAATGTGGGTTTTCTTGGTAGAGTTAATAATAAAAC 2144 | ||| ||||| | || ||||||| ||| | |||| | || ||||||||||| Sbjct 19047 G---TTT--TGTTTCGCTTGCATTAAATGTTGGTCATATTGGATGTGT-AATAATAAAAC 19100 Query 2145 TAACAAGTTTGCTTTGCAAGATTGTGT---TCACAAACGAATTGTAATTGGTAATGAAAT 2201 ||| ||||||||||||||||| ||| || || |||| | ||||| |||||||| Sbjct 19101 TAATCAGTTTGCTTTGCAAGATGCTGTAAATCGCA---GAATAATTATTGGCAATGAAAT 19157 Query 2202 ATCTTTGGAAGATGGAGCAAAGGAGGATATGAAGAAA 2238 ||| |||||||| || | | ||| ||| | || ||| Sbjct 19158 ATCATTGGAAGAAGGTCCTATGGAAGATTTAAAAAAA 19194 >seq447257 Length=2460 Score = 93.3 bits (102), Expect = 1e-15 Identities = 140/193 (73%), Gaps = 16/193 (8%) Strand=Plus/Plus Query 2029 AAAGTTAATACTGTATGTATAATTGGTAATCATAATTGTGGTAAGAATTATTTTTGGGAC 2088 ||| | |||||| | ||| |||| ||| ||| ||||| |||||| |||| | || || Sbjct 1954 AAATTAAATACTATGTGTGTAATAGGTCATCCTAATTCTGGTAAAAATTGGTCTTCTGAT 2013 Query 2089 GCAGTTTGCTGTTTGGGTT----TAAATGTGGGTTTTCTTGGTAGAGT-TAATAATAAAA 2143 |||| ||||| | || ||||||| ||| | |||| | | | ||||||||||| Sbjct 2014 T--GTTT--TGTTTCGCTTGCGTTAAATGTTGGTCATATTGG-ACATTGTAATAATAAAA 2068 Query 2144 CTAACAAGTTTGCTTTGCAAGATTGTGT---TCACAAACGAATTGTAATTGGTAATGAAA 2200 ||| ||||||||||||||||| ||| || || |||| | ||||| ||||||| Sbjct 2069 GTAATCAGTTTGCTTTGCAAGATGCTGTAAATCGCA---GAATAATTATTGGCAATGAAA 2125 Query 2201 TATCTTTGGAAGA 2213 |||| ||| |||| Sbjct 2126 TATCATTGTAAGA 2138 >seq353188 Length=9271 Score = 87.8 bits (96), Expect = 6e-14 Identities = 152/218 (70%), Gaps = 10/218 (5%) Strand=Plus/Plus Query 2107 TTAAATGTGGGTTTTCTTGGTAGAGTTAATAATAAAACTAACAAGTTTGCTTTGCAAGAT 2166 |||||||| ||| | |||| | |||||| |||||||| ||||||||||||||||| Sbjct 5604 TTAAATGTTGGTCATATTGGACGTTGTAATAACAAAACTAATTAGTTTGCTTTGCAAGAT 5663 Query 2167 TGTGTTCACAAAC---GAATTGTAATTGGTAATGAAATATCTTTGGAAGATGGAGCAAAG 2223 ||| |||| |||| | ||||| || |||||||| |||||||| || || | | Sbjct 5664 GCTGT---AAAACGCAGAATAATTATTGGCAACGAAATATCATTGGAAGAAGGTGCTATG 5720 Query 2224 GAGGATATGAAGAAATTATGTGAGGGGTGTCCATTCAATGTTAGCGTAAAACATCAATCA 2283 || ||| | || ||| | ||| | || | | | ||| || | || ||| || || Sbjct 5721 GAAGATTTCAAAAAAGTGTGTAAAGGAATTGCTTGTAATATTTGTGTTAAATATAAAGGC 5780 Query 2284 GATG--GAATTGTTGCCAGGACACCTGTTTGCTTAATT 2319 |||| |||| || | |||||||||| |||||| Sbjct 5781 GATGCCAAATTAAGGC--GTACACCTGTTTTATTAATT 5816 >seq731020 Length=6298 Score = 86.0 bits (94), Expect = 2e-13 Identities = 149/215 (69%), Gaps = 10/215 (5%) Strand=Plus/Plus Query 2035 AATACTGTATGTATAATTGGTAATCATAATTGTGGTAAGAATTATTTTTGGGACGCAGTT 2094 |||||| | ||| |||| | | || ||||| |||||| |||| |||| | | Sbjct 4391 AATACTTTGTGTGTAATAGCTCCTCCTAATTCTGGTAAAAATTGGTTTTTT-----ATTC 4445 Query 2095 TGCTGTTTGGGTT----TAAATGTGGGTTTTCTTGGTAGAGT-TAATAATAAAACTAACA 2149 | ||||| | || ||||||| ||| | ||| | | ||||||||||||||| Sbjct 4446 TTTTGTTTCGCTTGCATTAAATGTTGGTCATACTGGACAATTGTAATAATAAAACTAATC 4505 Query 2150 AGTTTGCTTTGCAAGATTGTGTTCACAAACGAATTGTAATTGGTAATGAAATATCTTTGG 2209 ||||||||||||||||| ||| | |||| | || || ||||||||||| |||| Sbjct 4506 AGTTTGCTTTGCAAGATGCTGTAAATCGTAGAATAATTATCGGCAATGAAATATCATTGG 4565 Query 2210 AAGATGGAGCAAAGGAGGATATGAAGAAATTATGT 2244 |||| || || | ||| ||| | || ||| | ||| Sbjct 4566 AAGAAGGTGCTATGGAAGATTTAAAAAAAGTGTGT 4600 >seq487092 Length=4135 Score = 86.0 bits (94), Expect = 2e-13 Identities = 153/221 (69%), Gaps = 8/221 (4%) Strand=Plus/Plus Query 2029 AAAGTTAATACTGTATGTATAATTGGTAATCATAATTGTGGTAAGAATTATTTTTGGGAC 2088 ||| | |||||| | ||| |||| ||| || ||||| |||||| |||| |||| || Sbjct 1975 AAATTAAATACTTTGTGTGTAATAGGTCCTCCTAATTCTGGTAAAAATTGGTTTTTTGAT 2034 Query 2089 GCAGTTTGCTGTTTGGGTT----TAAATGTGGGTTTTCTTGGTAGAGTTAATAATAAAAC 2144 |||| ||||| || ||||||| ||| | | || | |||||||||||| Sbjct 2035 T--GTTT--TGTTTCTATTGCATTAAATGTTGGTCATATGGGACGTTCTAATAATAAAAC 2090 Query 2145 TAACAAGTTTGCTTTGCAAGATTGTGTTCACAAACGAATTGTAATTGGTAATGAAATATC 2204 ||| | || |||||||| || ||| | |||| | ||||| ||||||||||| Sbjct 2091 TAATCATCTTTCTTTGCAACATGCTGTAAATCGTAGAATAATTATTGGCAATGAAATATC 2150 Query 2205 TTTGGAAGATGGAGCAAAGGAGGATATGAAGAAATTATGTG 2245 |||||||| |||| | ||| ||| | || ||| | |||| Sbjct 2151 ATTGGAAGAAAGAGCTATGGAAGATTTCAAAAAAGTGTGTG 2191 >seq369727 Length=10318 Score = 86.0 bits (94), Expect = 2e-13 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 2133 TAATAATAAAACTAACAAGTTTGCTTTGCAAGATTGTGTTCACAAACGAATTGTAATTGG 2192 |||||||||||||||| |||||||| |||||| ||| | | | ||||| | ||||| Sbjct 1941 TAATAATAAAACTAACCCTTTTGCTTTACAAGATGCTGTCAATAGAAGAATTATTATTGG 1882 Query 2193 TAATGAAATATCTTTGGAAGATGGAGCAAAGGAGGATATGAAGAAATTATGTGAGGG 2249 ||||||||| || ||||| ||||| ||| ||| | |||||| | ||| |||| Sbjct 1881 TAATGAAATTTCAACTGAAGACAGAGCATTGGAAGATTTTAAGAAAGTCTGTTAGGG 1825 >seq1026985 Length=12243 Score = 84.2 bits (92), Expect = 7e-13 Identities = 148/215 (69%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 2035 AATACTGTATGTATAATTGGTAATCATAATTGTGGTAAGAATTATTTTTGGGACGCAGTT 2094 |||||| |||||||||||||| || ||||| || || | || |||| | | | Sbjct 4706 AATACTTTATGTATAATTGGTCCTCCTAATTCAGGAAAAAGTTGGTTTTTTACTGTATTG 4647 Query 2095 TGCTGTTTGGGTTTAAATGTGGGTTTTCTTGGTAGAGTTAATAATAAAACTAACAAGTTT 2154 | | ||| |||| |||||| | | || | ||||||||||| || | ||| Sbjct 4646 TTCAACTTGCTTTTAC--GTGGGTCATATAGGACGTTACAATAATAAAACAAATCAATTT 4589 Query 2155 GCTTTGCAAGATTGTGTTCACAAACGAATTGTAATTGGTAATGAAATATCTTTGGAAGAT 2214 ||||| |||||| ||| | ||| ||| ||||||||||||||| || | |||||| Sbjct 4588 GCTTTACAAGATGCTGTCAATCGACGGATTAAAATTGGTAATGAAATTTCAATTGAAGAT 4529 Query 2215 GGAGCAAAGGAGGATATGAAGAAATTATGTGAGGG 2249 |||||| |||||| | || || |||||||| Sbjct 4528 GGAGCATTAGAGGATTTTAAAAAGGCTTGTGAGGG 4494 >seq1006908 Length=48242 Score = 84.2 bits (92), Expect = 7e-13 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 2134 AATAATAAAACTAACAAGTTTGCTTTGCAAGATTGTGTTCACAAACGAATTGTAATTGGT 2193 ||||| ||||| || ||||||| || |||||| || ||| || ||| | || || Sbjct 18545 AATAACAAAACAAATCAGTTTGCATTCCAAGATGCAATTAACAGACTCATTATCATAGGA 18486 Query 2194 AATGAAATATCTTTGGAAGATGGAGCAAAGGAGGATATGAAGAAATTATGTGAGGG 2249 ||||||||||| |||||||| || |||| ||| || | |||||| ||||||| || Sbjct 18485 AATGAAATATCATTGGAAGAGGGTGCAATGGAAGACTTTAAGAAAGTATGTGAAGG 18430 >seq130590 Length=34219 Score = 80.6 bits (88), Expect = 9e-12 Identities = 89/116 (77%), Gaps = 2/116 (2%) Strand=Plus/Minus Query 2106 TTTAAATGTGGGTTTTCTTGGTAGAGT-TAATAATAAAACTAACAAGTTTGCTTTGCAAG 2164 ||||||||| || || |||| | | | || ||||||||| | |||||||||| |||| Sbjct 14221 TTTAAATGTACGTCTTATTGG-ACATTGTAGTAATAAAACCGATCAGTTTGCTTTACAAG 14163 Query 2165 ATTGTGTTCACAAACGAATTGTAATTGGTAATGAAATATCTTTGGAAGATGGAGCA 2220 || | || ||| | || || |||||||||||||||| || | || ||||||||| Sbjct 14162 ATGCTATTAACAGAAGACTTATAATTGGTAATGAAATTTCCATTGATGATGGAGCA 14107 >seq796784 Length=21241 Score = 78.8 bits (86), Expect = 3e-11 Identities = 149/217 (69%), Gaps = 3/217 (1%) Strand=Plus/Plus Query 2035 AATACTGTATGTATAATTGGTAATCATAATTGTGGTAAGAATTATTTTTGGGACGCAGTT 2094 ||||| ||||||| |||||| || ||||| ||| || ||| || || | | | Sbjct 20713 AATACATTATGTATCATTGGTTCTCCTAATTCTGGAAACAATGGTTCTTTGATTGTTTTA 20772 Query 2095 TGCTGTTTGGGTTTAAATGTGGGTTTTCTTGGTAGAGTTAATAATAAAACTAACAAGTTT 2154 | | | | | || ||||| || | | |||||| |||||||||||||||| | ||| Sbjct 20773 TA-TCTCTTGCTTCAAATGATGGGCATATAGGTAGATGTAATAATAAAACTAACCAATTT 20831 Query 2155 GCTTTGCAAGATTGTGTTCACAAACGAATTGT--AATTGGTAATGAAATATCTTTGGAAG 2212 |||||||| |||| ||| | | || ||| | || |||||||| ||||| | ||| Sbjct 20832 GCTTTGCAGGATTCCGTTAATAGGCGTATTATTATATAGGTAATGAGATATCAATATAAG 20891 Query 2213 ATGGAGCAAAGGAGGATATGAAGAAATTATGTGAGGG 2249 | || | | ||||| | || ||| ||||||| || Sbjct 20892 AGGGTGGATTAGAGGACTTCAAAAAAGTATGTGAAGG 20928 >seq474457 Length=24147 Score = 78.8 bits (86), Expect = 3e-11 Identities = 116/163 (71%), Gaps = 1/163 (1%) Strand=Plus/Plus Query 2133 TAATAATAAAACTAACAAGTTTGCTTTGCAAGATTGTGTTCACAAACGAATTGTAATTGG 2192 ||| || |||| || |||||||||| |||||| | || || | | ||| ||||||| Sbjct 6747 TAACAACAAAATCAATCAGTTTGCTTTACAAGATGCTATTAACTGAAGGATTATAATTGG 6806 Query 2193 TAATGAAATATCTTTGGAAGATGGAGCAAAGGAGGATATGAAGAAATTATGTGAGGGGTG 2252 ||||||||| || | ||||||| ||||| ||||| | || ||| | |||||||| Sbjct 6807 TAATGAAATTTCCATTGAAGATGAAGCAATAGAGGACTTTAA-AAAGTTTGTGAGGGTAT 6865 Query 2253 TCCATTCAATGTTAGCGTAAAACATCAATCAGATGGAATTGTT 2295 | ||| ||| | | ||||| | ||| |||| |||| || Sbjct 6866 TGCATGTAATATATGTGTAAAGTACAAATGGGATGCAATTCTT 6908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16382505368220