Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Locusta_20migratoria_20[genbank_20GCA_5F000516895.1_202013-12-18] 1,397,492 sequences; 5,759,798,599 total letters Query= NC_022748.1 Length=5280 Score E Sequences producing significant alignments: (Bits) Value seq303765 91.5 5e-15 seq648028 86.0 2e-13 seq430 86.0 2e-13 seq126798 84.2 7e-13 seq1365069 78.8 3e-11 >seq303765 Length=9691 Score = 91.5 bits (100), Expect = 5e-15 Identities = 114/154 (74%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 2274 TAATAATAAGACAAATCAATTTGCCCTTCAAGAATGTTACGGTC-GACGCCTTGTCGTTG 2332 ||| ||||| || ||||||||||||||||||| || | | |||| || | |||| Sbjct 2569 TAACAATAAAACCGATCAATTTGCCCTTCAAGA-TGCTGTAAACAGACGTGTTATTGTTG 2627 Query 2333 GTAACGAAGTAAGCATGGAAGACGGTGCAAAAGAAGATTTTAAAAAGTTGTGTGAAGGCA 2392 |||| ||| | ||||||| ||||| | ||||||||||||||| | |||||||| | Sbjct 2628 GTAATGAAATTTCATTGGAAGAAGGTGCTATAGAAGATTTTAAAAAAGTTTGTGAAGGAA 2687 Query 2393 CGGCATTCAATATTAGAGTTAAATATCAAGGCGA 2426 |||| || ||| ||| |||||| |||| || Sbjct 2688 TAGCATGTAACATTCAAGTAAAATATAAAGGAGA 2721 >seq648028 Length=18282 Score = 86.0 bits (94), Expect = 2e-13 Identities = 177/259 (68%), Gaps = 6/259 (2%) Strand=Plus/Minus Query 2170 AAAATGAATGCCTTGTGTGTTATAGGGCCACCGAACAGTGGTAAAAACTATTTCTGGGAT 2229 ||| |||| | |||||| || | || ||||| || |||||||| | || | || Sbjct 14425 AAATTGAACACATTGTGTATTGTTGGACCACCAAATTCGGGTAAAAATTGGTTTTTTAAT 14366 Query 2230 ATGTTTTGCTCTGTCGCATACAATGTGGGCCACATTGGGCGGGTTAATAATAAGACAAAT 2289 || ||| | |||| ||||| || || |||| ||| ||||| | |||| Sbjct 14365 TATTTCATTTCTTTAGCATTGAATGTTGGTCATATTGCTATATGTAACAATAAAAAAAAT 14306 Query 2290 CAATTTGCCCTTCAAGAAT--GTTACGGTCGACGCCTTGTCGTTGGTAACGAAGTAAGCA 2347 || |||||| ||||||| |||| |||| || | |||||||| ||| | | Sbjct 14305 CAGTTTGCCATTCAAGATGCAGTTAACA--GACGTGTTATTGTTGGTAAAGAATTTTCAA 14248 Query 2348 TGGAAGACGGTGCAAAAGAAGATTTTAAAAAGTTGTGTGAAGGCACGGCATTCAATATTA 2407 ||||||| |||| | | ||||||||||||||||| |||||||| | ||| || ||| Sbjct 14247 TGGAAGAAGGTGGATA-GAAGATTTTAAAAAGTT-TGTGAAGGAATATCATGTAACATTC 14190 Query 2408 GAGTTAAATATCAAGGCGA 2426 | || |||||| |||| || Sbjct 14189 GTGTAAAATATAAAGGAGA 14171 >seq430 Length=13990 Score = 86.0 bits (94), Expect = 2e-13 Identities = 134/187 (72%), Gaps = 6/187 (3%) Strand=Plus/Plus Query 2239 TCTGTCGCATACAATGTGGGCCACATTGGGCGGGTTAATAATAAGACAAATCAATTTGCC 2298 ||| | |||| ||||| || || ||||| | ||| ||||| |||||||||||||| Sbjct 10510 TCTTTAGCATTGAATGTTGGTCATATTGGTAGATGTAACAATAAAACAAATCAATTTGCT 10569 Query 2299 CTTCAAGA--ATGTTACGGTCGACGCCTTGTCGTTGGTAACGAAGTAAGCATGGAAGACG 2356 |||||||| |||| | |||| || || |||| ||| || | || ||||| | Sbjct 10570 CTTCAAGATGCAGTTA--ATAGACGTATTATCATTGGAAACAAAATTCCTATTGAAGAAG 10627 Query 2357 GTGCAAAAGAAGATTTTAA-AAAGTTGTGTGAAGGCACGGCATTCAATATTAGAGTTAAA 2415 |||| | || ||||||| |||||| ||||||||| || | |||||| | || ||| Sbjct 10628 GTGCTACGGAGTATTTTAAGAAAGTT-TGTGAAGGCGTAGCTTGTAATATTCGTGTCAAA 10686 Query 2416 TATCAAG 2422 ||| ||| Sbjct 10687 TATAAAG 10693 >seq126798 Length=10002 Score = 84.2 bits (92), Expect = 7e-13 Identities = 224/331 (68%), Gaps = 11/331 (3%) Strand=Plus/Plus Query 2185 TGTGTTATAGGGCCACCGAACAGTGGTAAAAACTATTTCTGGGATATGTTTTGC-TCTGT 2243 ||||| |||||||| || || |||||| | || | || | || ||||| ||||| Sbjct 3650 TGTGTAATAGGGCCTCCTAATAGTGGTCAGAATTGGTTTTTTGAC-TGTTTAATATCTGT 3708 Query 2244 CGCATACAATGTGGGCCACATTGGGCGGGTTAATAATAAGACAAATCAATTTGCCCTTCA 2303 || ||||| ||||| ||||| || | ||||||| || ||||||||||| |||| Sbjct 3709 AGCTCTAAATGTAGGCCATATTGGCCG---TTATAATAAAACTAATCAATTTGCACTTCG 3765 Query 2304 AGAATGTTACGGTC-GACGCCTTGTCGTTGGTAACGAAGTAAGCATGGAAGACGGTGCAA 2362 || ||| | | || | | | ||||| |||||| | ||| ||| | |||| Sbjct 3766 AG-ATGCTGTAAACAGAAGAATAATAGTTGGGAACGAAATTTCATTGGTAGAAGCTGCAT 3824 Query 2363 AAGAAGATTTTAA-AAAGTTGTGTGAAGGCACGGCATTCAATATTAGAGTTAAATATCAA 2421 ||| |||||||| |||||| || ||||| | || | || ||| | ||||||||| || Sbjct 3825 TAGACGATTTTAAGAAAGTT-TGCGAAGGTATAGCTTGTAACATTCGTGTTAAATATAAA 3883 Query 2422 GGCGATAAAATATTTAC-TAAAGCACCTGTTCTTCTGATAAGTAACTTTGAACTAGATAT 2480 || ||| || ||||| | | | ||| | ||| |||| ||| | ||| | | | Sbjct 3884 GGTGATTCCAT-TTTACGTCGAACTCCTCTACTTTTGATTTCTAATTGCCAACCCGTTGT 3942 Query 2481 ATGTTATGATACACATTTTAAAAATGTACGT 2511 |||| | || | ||| |||| || ||||| Sbjct 3943 ATGTAGTCATCCTGATTGTAAAGATATACGT 3973 >seq1365069 Length=785 Score = 78.8 bits (86), Expect = 3e-11 Identities = 126/179 (70%), Gaps = 4/179 (2%) Strand=Plus/Minus Query 2251 AATGTGGGCCACATTGGGCGGGTTAATAATAAGACAAATCAATTTGCCCTTCAAGA--AT 2308 ||| |||| || || || || |||||||| |||||||||||| | | ||||| || Sbjct 475 AATATGGGTCATATAGGACGCTGCAATAATAAAACAAATCAATTTACTTTACAAGATGAT 416 Query 2309 GTTACGGTCGACGCCTTGTCGTTGGTAACGAAGTAAGCATGGAAGACGGTGCAAAAGAAG 2368 || | |||||| || | ||||||| | | | || ||||| || ||| ||| | Sbjct 415 GTCAA--TCGACGAATTATAATTGGTAATGGAATTTCAATTGAAGATGGCGCATTAGAGG 358 Query 2369 ATTTTAAAAAGTTGTGTGAAGGCACGGCATTCAATATTAGAGTTAAATATCAAGGCGAT 2427 ||||||||||| | ||||| || | |||| ||||| | ||||| || |||| ||| Sbjct 357 ATTTTAAAAAGGTTTGTGACGGTATTGCATGTAATATGCGTGTTAACTACAAAGGAGAT 299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16527455406100