Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_003287.2 Length=6407 Score E Sequences producing significant alignments: (Bits) Value seq229 109 2e-20 >seq229 Length=456533 Score = 109 bits (120), Expect = 2e-20 Identities = 167/233 (72%), Gaps = 10/233 (4%) Strand=Plus/Plus Query 3412 GGTAATGATTCCTACGATGAAAATAAAAACGGCTTGCTTGTTCTCGATGAGTGCGGTACT 3471 |||||| ||||| |||||| | |||||| || ||| | |||||||| || || Sbjct 1565 GGTAATACCTCCTATGATGAATCACGTACCGGCTTACTCGTTTTAGATGAGTGTGGGACA 1624 Query 3472 TGGTTTAATACCCGTTCTTGGAATGATAAGGAAAGACAGCC-GATT--ATTGATTGGTTT 3528 |||||||| | ||||||||| ||||| ||| | | ||| ||| |||||| Sbjct 1625 TGGTTTAACTCTCGTTCTTGGGCCGATAA---AAGCCGTCAAGATCTCATTTCGTGGTTT 1681 Query 3529 CTACATGCTCGTAAATTAGGATGGGATATTATTTTTCTTGTTCAGGACTTATCTATTGTT 3588 |||||||||||||| || ||||| ||||||||||| || || ||| ||| || Sbjct 1682 GCGCATGCTCGTAAATTGGGTTGGGACATTATTTTTCTCGTGCAAAGCTTGCATATAGTG 1741 Query 3589 GATAAAC--AGGCGCGTTCTGCATTAGCTGAACATGTTGTTTATTGTCGTCGT 3639 ||||||| || || || | | || ||||||||||| || |||||||| ||| Sbjct 1742 GATAAACAAAGCCGAGT--TTCGTTTGCTGAACATGTGGTGTATTGTCGCCGT 1792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 20386807113172