Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20sericata_20[genbank_20GCA_5F001014835.1_202015-05-28] 92,075 sequences; 319,935,455 total letters Query= NC_009987.1 Length=7870 Score E Sequences producing significant alignments: (Bits) Value seq52966 98.7 5e-17 >seq52966 Length=2238 Score = 98.7 bits (108), Expect = 5e-17 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 5830 ATTTGAATTGTTAATACTATTCCGGGAGTTAAGCAAGTTAACGAGTTAGCGAGTGGTGTT 5889 || |||||||| |||| ||| || || ||||| |||| ||||||||||||||||| || Sbjct 808 ATATGAATTGTAAATAATATACCAGGTGTTAAACAAGCAAACGAGTTAGCGAGTGGAGTA 749 Query 5890 GGCAAGGTTTTTGAGACAGTATATAGtttttttAGTCAAATATTCGAAGTATGAAAATT 5948 || || | ||| | || ||||| ||||||| ||||| ||| ||| |||||||||| Sbjct 748 GGTAAATTATTTCAAACGACATATAATTTTTTTGCTCAAACATTTGAAATATGAAAATT 690 Score = 82.4 bits (90), Expect = 4e-12 Identities = 92/121 (76%), Gaps = 4/121 (3%) Strand=Plus/Minus Query 5245 ATTAATGATAAATTACAATTTGATAAATTATT--AAATAGTATGTTTAAGATTTCACAGA 5302 ||| || ||||||| ||| || ||| |||| |||||||| ||||| ||| | | Sbjct 1429 ATTGATTTTAAATTAAAAT--GAAAAAATATTTTAAATAGTAGTTTTAAAATTATGAATA 1372 Query 5303 AATTTTATACTAATTATTTACGAACGATTTTTGATTTAGAAAATAATACTTATGTTCAAG 5362 | ||||||| |||||||||||| || ||||||||||||||| | ||||| |||||| Sbjct 1371 ACTTTTATAAAAATTATTTACGAGTAATGTTTGATTTAGAAAATGAAACTTACATTCAAG 1312 Query 5363 G 5363 | Sbjct 1311 G 1311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 25042832640200