Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_001422.1 Length=5386 Score E Sequences producing significant alignments: (Bits) Value seq2906 461 3e-126 seq8099 455 1e-124 seq4596 439 8e-120 seq3737 435 1e-118 seq5320 425 2e-115 >seq2906 Length=255 Score = 461 bits (510), Expect = 3e-126 Identities = 255/255 (100%), Gaps = 0/255 (0%) Strand=Plus/Minus Query 4318 CTATAGACCACCGCCCCGAAGGGGACGAAAAATGGTTTTTAGAGAACGAGAAGACGGTTA 4377 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 255 CTATAGACCACCGCCCCGAAGGGGACGAAAAATGGTTTTTAGAGAACGAGAAGACGGTTA 196 Query 4378 CGCAGTTTTGCCGCAAGCTGGCTGCTGAACGCCCTCTTAAGGATATTCGCGATGAGTATA 4437 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 195 CGCAGTTTTGCCGCAAGCTGGCTGCTGAACGCCCTCTTAAGGATATTCGCGATGAGTATA 136 Query 4438 ATTACCCCAAAAAGAAAGGTATTAAGGATGAGTGTTCAAGATTGCTGGAGGCCTCCACTA 4497 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 135 ATTACCCCAAAAAGAAAGGTATTAAGGATGAGTGTTCAAGATTGCTGGAGGCCTCCACTA 76 Query 4498 TGAAATCGCGTAGAGGCTTTGCTATTCAGCGTTTGATGAATGCAATGCGACAGGCTCATG 4557 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 75 TGAAATCGCGTAGAGGCTTTGCTATTCAGCGTTTGATGAATGCAATGCGACAGGCTCATG 16 Query 4558 CTGATGGTTGGTTTA 4572 ||||||||||||||| Sbjct 15 CTGATGGTTGGTTTA 1 >seq8099 Length=255 Score = 455 bits (504), Expect = 1e-124 Identities = 254/255 (99%), Gaps = 0/255 (0%) Strand=Plus/Minus Query 2525 TTGATAGTTTGACGGTTAATGCTGGTAATGGTGGTTTTCTTCATTGCATTCAGATGGATA 2584 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 255 TTGATAGTTTGACGGTTAATGCTGGTAATGGTGGTTTTCTTCATTGCATTCAGATGGATA 196 Query 2585 CATCTGTCAACGCCGCTAATCAGGTTGTTTCTGTTGGTGCTGATATTGCTTTTGATGCCG 2644 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 195 CATCTGTCAACGCCGCTAATCAGGTTGTTTCTGTTGGTGCTGATATTGCTTTTGATGCCG 136 Query 2645 ACCCTAAATTTTTTGCCTGTTTGGTTCGCTTTGAGTCTTCTTCGGTTCCGACTACCCTCC 2704 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 135 ACCCTAAATTTTTTGCCTGTTTGGTTCGCTTTGAGTCTTCTTCGGTTCCGACTACCCTCC 76 Query 2705 CGACTGCCTATGATGTTTATCCTTTGAATGGTCGCCATGATGGTGGTTATTATACCGTCA 2764 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 75 CGACTGCCTATGATGTTTATCCTTTGGATGGTCGCCATGATGGTGGTTATTATACCGTCA 16 Query 2765 AGGACTGTGTGACTA 2779 ||||||||||||||| Sbjct 15 AGGACTGTGTGACTA 1 >seq4596 Length=246 Score = 439 bits (486), Expect = 8e-120 Identities = 245/246 (99%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 4323 GACCACCGCCCCGAAGGGGACGAAAAATGGTTTTTAGAGAACGAGAAGACGGTTACGCAG 4382 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 246 GACCACCGCCCCGAAGGGGACGAAAAATGGTTTTTAGAGAACGAGAAGACGGTTACGCAG 187 Query 4383 TTTTGCCGCAAGCTGGCTGCTGAACGCCCTCTTAAGGATATTCGCGATGAGTATAATTAC 4442 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 186 TTTTGCCGCAAGCTGGCTGCTGAACGCCCTCTTAAGGATATTCGCGATGAGTATAATTAC 127 Query 4443 CCCAAAAAGAAAGGTATTAAGGATGAGTGTTCAAGATTGCTGGAGGCCTCCACTATGAAA 4502 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 126 CCAAAAAAGAAAGGTATTAAGGATGAGTGTTCAAGATTGCTGGAGGCCTCCACTATGAAA 67 Query 4503 TCGCGTAGAGGCTTTGCTATTCAGCGTTTGATGAATGCAATGCGACAGGCTCATGCTGAT 4562 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 66 TCGCGTAGAGGCTTTGCTATTCAGCGTTTGATGAATGCAATGCGACAGGCTCATGCTGAT 7 Query 4563 GGTTGG 4568 |||||| Sbjct 6 GGTTGG 1 >seq3737 Length=246 Score = 435 bits (482), Expect = 1e-118 Identities = 244/246 (99%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 2531 GTTTGACGGTTAATGCTGGTAATGGTGGTTTTCTTCATTGCATTCAGATGGATACATCTG 2590 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 246 GTTTGACGGTTAATGCTGGTAATGGTGGTTTTCTTCATTGCATTCAGATGGATACATCTG 187 Query 2591 TCAACGCCGCTAATCAGGTTGTTTCTGTTGGTGCTGATATTGCTTTTGATGCCGACCCTA 2650 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 186 TCAACGCCGCTAATCAGGTTGTTTCTGTTGGTGCTGATATTGCTTTTGATGCCGACCCTA 127 Query 2651 AATTTTTTGCCTGTTTGGTTCGCTTTGAGTCTTCTTCGGTTCCGACTACCCTCCCGACTG 2710 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 126 ATTTTTTTGCCTGTTTGGTTCGCTTTGAGTCTTCTTCGGTTCCGACTACCCTCCCGACTG 67 Query 2711 CCTATGATGTTTATCCTTTGAATGGTCGCCATGATGGTGGTTATTATACCGTCAAGGACT 2770 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 66 CCTATGATGTTTATCCTTTGGATGGTCGCCATGATGGTGGTTATTATACCGTCAAGGACT 7 Query 2771 GTGTGA 2776 |||||| Sbjct 6 GTGTGA 1 >seq5320 Length=246 Score = 425 bits (470), Expect = 2e-115 Identities = 243/247 (98%), Gaps = 1/247 (0%) Strand=Plus/Minus Query 4323 GACCACCGCCCCGAAGGGGACGAAAAATGGTTTTTAGAGAACGAGAAGACGGTTACGCAG 4382 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 246 GACCACCGCCCCGAAGGGGACGAAAAATGGTTTTTAGAGAACGAGAAGACGGTTACGCAG 187 Query 4383 TTTTGCCGCAAGCTGGCTGCTGAACGCCCTCTTAAGGATATTCGCGATGAGTATAATTAC 4442 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 186 TTTTGCCGCAAGCTGGCTGCTGAACGCCCTCTTAAGGATATTCGCGATGAGTATAATTA- 128 Query 4443 CCCAAAAAGAAAGGTATTAAGGATGAGTGTTCAAGATTGCTGGAGGCCTCCACTATGAAA 4502 ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct 127 CCCAAAAAGAAAGGTATTAAGGATGAGTGTTCAAGATTGTAGGTGGCCTCCACTATGAAA 68 Query 4503 TCGCGTAGAGGCTTTGCTATTCAGCGTTTGATGAATGCAATGCGACAGGCTCATGCTGAT 4562 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 67 TCGCGTAGAGGCTTTGCTATTCAGCGTTTGATGAATGCAATGCGACAGGCTCATGCTGAT 8 Query 4563 GGTTGGT 4569 ||||||| Sbjct 7 GGTTGGT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17120786083635