Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_004285.1 Length=4176 Score E Sequences producing significant alignments: (Bits) Value seq12556 120 8e-24 seq8938 80.6 7e-12 >seq12556 Length=2442 Score = 120 bits (132), Expect = 8e-24 Identities = 225/322 (70%), Gaps = 8/322 (2%) Strand=Plus/Plus Query 1949 AATAATATAAATATAATACACTTTTTGGCATGGAATGAA-ATCATCAAACCAAAAAGATA 2007 ||||||||||| | ||| |||| || |||||| |||| || || ||| | | || Sbjct 1606 AATAATATAAACCTCATAAACTTCTTAGCATGG-GTGAATATAATTAAAAACATGCGCTA 1664 Query 2008 CaaaaaaaTCAACGGCATGGTACTAGAAGGTATAACAAACGCAGGTAAATCGC-TAATAT 2066 | |||||||||||| | | || ||||| ||| || ||||| ||| || ||||| Sbjct 1665 CCAAAAAATCAACGCGCTAATCCTTCAAGGTCAAACGAATGCAGG-AAAGAGCTTAATAA 1723 Query 2067 TAGACAACTTATTAGCAATGGTTAAACCGGAAGAAATACCAAGAGAAAGAGACAACAGCG 2126 | || |||| | | || ||||||| ||||||| |||||||||||||||||||| Sbjct 1724 TCCGCACCTTAACATCCATCTTTAAACCTACAGAAATATCAAGAGAAAGAGACAACAGCA 1783 Query 2127 GATTCCACTTGGATCAACTACCAGGAGCAGGATCAGTACTATTTGAAGAACCGATGATTA 2186 |||||||| |||||| ||||| ||| | || | |||| |||||||| | || | Sbjct 1784 ATTTCCACTTAGATCAATTACCAACAGCCACAGGAGCATTATTCGAAGAACCACTAATCA 1843 Query 2187 CACCAGTAAACGTAGGAACATGGAAATTATTATTGGAAGGA-AAAACAATCAA-AACGGA 2244 | ||| || || || ||||| || | | |||||| | ||| ||| || || Sbjct 1844 CCCCAAGCAATGTGAATACCAGGAAACTACTGCTCGAAGGAGCAGACA--CAATGACCGA 1901 Query 2245 CGTAAAAAACAAAGACAAGGAA 2266 | ||| |||||| ||||| ||| Sbjct 1902 CATAATAAACAACGACAAAGAA 1923 >seq8938 Length=60245 Score = 80.6 bits (88), Expect = 7e-12 Identities = 73/89 (82%), Gaps = 6/89 (7%) Strand=Plus/Plus Query 3422 GGAACAGAACATCATATCCAAGAAT-GCAC----ATT-GCACAACCACAAGTTCCAGACG 3475 |||| |||||||||||||||| || | || ||| | |||||| |||| | ||||| Sbjct 2857 GGAATAGAACATCATATCCAATGATAGTACGAGTATTAGGTCAACCAAAAGTACGAGACG 2916 Query 3476 AAACAGGATTCATGAAATTCAGATATCAA 3504 ||||||||| ||||||||||||||||||| Sbjct 2917 AAACAGGATGCATGAAATTCAGATATCAA 2945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13249331932785