Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_012636.1 Length=3776 Score E Sequences producing significant alignments: (Bits) Value seq12556 77.0 8e-11 >seq12556 Length=2442 Score = 77.0 bits (84), Expect = 8e-11 Identities = 154/227 (68%), Gaps = 6/227 (3%) Strand=Plus/Plus Query 2004 ACAAATGCAGGAAAATCACTAATATTGGACAATTTATTAGCAATGGTAAAACCAGAAGAA 2063 || ||||||||||| ||||| | || ||| | | || | ||||| |||| Sbjct 1699 ACGAATGCAGGAAAGAGCTTAATAATCCGCACCTTAACATCCATCTTTAAACCTACAGAA 1758 Query 2064 ATACCACGAGAAAGAGACAACAGTGGATTCCACCTTGATCAAGTACCAGGAG---CAGGA 2120 ||| || |||||||||||||||| |||||| | |||||| ||||| || ||||| Sbjct 1759 ATATCAAGAGAAAGAGACAACAGCAATTTCCACTTAGATCAATTACCAACAGCCACAGGA 1818 Query 2121 TCAATCCTATTTGAAGAACCAATGATCACACCAGTAAACGTCGGAACATGGAAATTATTA 2180 || |||| ||||||||| | ||||| ||| || || || ||||| || | Sbjct 1819 GCA---TTATTCGAAGAACCACTAATCACCCCAAGCAATGTGAATACCAGGAAACTACTG 1875 Query 2181 CTAGAAGGAAAAACCATAAAAACGGATGTGAAAAATAAAGACAAAGA 2227 || |||||| | || || || || | | ||| || |||||||| Sbjct 1876 CTCGAAGGAGCAGACACAATGACCGACATAATAAACAACGACAAAGA 1922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 11969512378785