Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maconellicoccus_20hirsutus_20[genbank_20GCA_5F900064465.1_202016-03- 26] 12,889 sequences; 163,044,544 total letters Query= NC_015115.1 Length=3893 Score E Sequences producing significant alignments: (Bits) Value seq12556 84.2 5e-13 >seq12556 Length=2442 Score = 84.2 bits (92), Expect = 5e-13 Identities = 156/228 (68%), Gaps = 6/228 (3%) Strand=Plus/Plus Query 2012 AACAAATGCAGGAAAATCACTAATATTGGACAACTTATTGGCCATGGTAAAACCAGAAGA 2071 ||| ||||||||||| ||||| | || |||| |||| | ||||| ||| Sbjct 1698 AACGAATGCAGGAAAGAGCTTAATAATCCGCACCTTAACATCCATCTTTAAACCTACAGA 1757 Query 2072 GATACCACGAGAAAGAGACAACAGCGGATTCCACCTTGACCAAGTACCAGGAG---CAGG 2128 ||| || ||||||||||||||||| |||||| | || ||| ||||| || |||| Sbjct 1758 AATATCAAGAGAAAGAGACAACAGCAATTTCCACTTAGATCAATTACCAACAGCCACAGG 1817 Query 2129 ATCAATCCTATTCGAAGAACCAATGATAACACCAGTAAACGTCGGAACATGGAAATTATT 2188 | || |||||||||||||| | || || ||| || || || ||||| || | Sbjct 1818 AGCA---TTATTCGAAGAACCACTAATCACCCCAAGCAATGTGAATACCAGGAAACTACT 1874 Query 2189 ACTGGAAGGaaaaaccataaaaacggatgtaaaaaataaaGACAAAGA 2236 || |||||| | || || || || ||| ||| || |||||||| Sbjct 1875 GCTCGAAGGAGCAGACACAATGACCGACATAATAAACAACGACAAAGA 1922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 12343859598330