Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesobuthus_20martensii_20[genbank_20GCA_5F000484575.1_202013-10-28] 92,408 sequences; 925,546,267 total letters Query= NC_005041.2 Length=5335 Score E Sequences producing significant alignments: (Bits) Value seq40249 425 2e-115 >seq40249 Length=5477 Score = 425 bits (470), Expect = 2e-115 Identities = 482/647 (74%), Gaps = 21/647 (3%) Strand=Plus/Plus Query 978 ACTATGGGAGATGATGCCGGACGAGATAGCGTCTCATCCAGCGACATGGTGGAAGCTGTT 1037 ||| ||||||||| | ||||||||| ||| |||||| | |||||||||| | | Sbjct 2693 ACTCTGGGAGATGCTTCCGGACGAGTGGGCGAATCATCCGGGAGTATGGTGGAAGATTAT 2752 Query 1038 GGAGGAGAGCCCTCTGGAGGACCGGTTCAAGGACAAGCTGAAGTCACTTCTAGTTCGG-- 1095 ||| || || ||||| | | | |||| | || || || || ||| | || Sbjct 2753 GGATACGATACCACTGGACCAACAATGCAAGAAT--GC-GATGTTACAGCTAATAGGGCG 2809 Query 1096 -TGGACCAAAAATTACAAGAATTGGTTGATCGGTTCGTTTCCCGCCTTGAAGaaaaaaaT 1154 |||| ||| |||||||| | |||| || ||||||||| ||||||||||| || || || Sbjct 2810 TTGGAGCAAGAATTACAAACAATGGTCGACCGGTTCGTTACCCGCCTTGAAAAAGAAGAT 2869 Query 1155 TGGAAAGACAGTGGATACTATATTAGCGATGTATATGCCTGCGAATCATCTGAACGAGCT 1214 ||| ||||||| ||||||||| | ||||| | ||||||||||||| || ||||||| Sbjct 2870 TGGCAAGACAGCGGATACTATGTGTCAGATGTCTTTGCCTGCGAATCAATTGGACGAGCT 2929 Query 1215 AATGCACTGGCTAGACGACTGGAGCAAAGAGCTGAATCTTTCGGAAGAGGATTTATCGGA 1274 | | | |||||| ||| ||| || |||| | | |||| || ||||| ||||| Sbjct 2930 CAGGGAATGGCTAAGCGAATGGCTGAACGAGCGGGAAATTTCCGACGAGGACTTATCCTT 2989 Query 1275 ATATTTATCCACAATAATCACG---------------TCCATACAATCCACGCATGCCCC 1319 |||| |||||||| |||| | |||| || |||||| ||| || Sbjct 2990 ATATCTATCCACAGCGATCAGGATGGTGGTGCCCATATCCACACCATCCACAGCTGCGCC 3049 Query 1320 TACACAAGCAGGACGTGCAGGTGCCAGTTCAAGAACTTCCCTGAAGCGAAAGAAGACATT 1379 ||| ||| |||| ||||||||||| | ||||| ||||| |||||| |||| ||| | Sbjct 3050 TACGCAAACAGGTCGTGCAGGTGCTACTTCAAAGCGTTCCCCGAAGCGCAAGAGGACGCT 3109 Query 1380 AGACGATTGCTTCGAAAGCCTCCAGCCATCGAAACGTTCACACGACGAGACTGGGAAAAT 1439 |||||| | ||||||||||||||| ||||||||||||||| ||| | || ||||||||| Sbjct 3110 AGACGACTTCTTCGAAAGCCTCCACCCATCGAAACGTTCAAGCGAAGCGATTGGGAAAAT 3169 Query 1440 ATCACAAAGTATTTTTGTACGTCAGGGCGACGAGCAACGTTCTTTAAAATCTTTGGACAC 1499 ||||||||||||||||||||| |||| |||||||||||||| ||||||| || | Sbjct 3170 ATCACAAAGTATTTTTGTACGAAAGGGAGACGAGCAACGTTCGCTAAAATCAACGGTGCC 3229 Query 1500 CTACAAAGATTACCTCTTGAAATTACAGCTTTATCCGACTCTACAATATCAGGCCAAGAT 1559 |||||||| | ||||||||||||||| |||||||||| || |||||||||||| | Sbjct 3230 ATACAAAGACTTCCTCTTGAAATTACAAATTTATCCGACATTATCCTATCAGGCCAAGTT 3289 Query 1560 GGAGGAGGACCGGACTCAGGCGTGGAGAACTGCAATGATCCGCTTGA 1606 | ||||||| | |||||||| ||||||||||| | || |||||||| Sbjct 3290 GAAGGAGGATCACACTCAGGCCTGGAGAACTGCCACGACCCGCTTGA 3336 Score = 268 bits (296), Expect = 3e-68 Identities = 478/688 (69%), Gaps = 25/688 (4%) Strand=Plus/Plus Query 1692 GGCGGAGACGGAGGAATCGGAGGAGCTACAGGAATAATTTTGGACTTG-TTAAGTAAGTG 1750 || ||||| ||||||||| |||| | |||||| ||||| | || || ||||| | || Sbjct 3491 GGAGGAGATGGAGGAATCAGAGGGGACACAGGAGTAATTCTTGATTTAATTAAG-AGGTA 3549 Query 1751 TGCAGTCTGTCCTTTAACAGAGATAGTGTTTACTAAAGAATATTTGCAAGATCCCATAGT 1810 ||| || ||||| ||| | |||||||| | |||| || || ||| || ||||| | Sbjct 3550 TGCTGTTTGTCCATTATCTGAGATAGTATATACTCGCGAGTACTTGGAAAATCCCCT--- 3606 Query 1811 TGCTTGTAAAAGATTAGATTCAAAAGAGGTTAAGGATGCTATAGATACTAGGGCTAGTGT 1870 ||| |||||| |||||| | || || ||| | ||||||||| ||| | | Sbjct 3607 TGCAGTTAAAAGGTTAGATGATAGGGATGTAAAGAACGCTATAGATTGCCATGCTGCTAT 3666 Query 1871 AATCAATACTTGGGAAAGGGAAGATTTTGTTGCTTTTTATAATAATCCAAATACTATATT 1930 || ||||||||| | || || |||| |||| |||||| | | ||||| ||| | Sbjct 3667 TATTAATACTTGGAATAGAGAGGATTATGTTAAGTTTTATGAGGACCCAAACACTGTTAA 3726 Query 1931 AATTTGGAGTGCACGTTCTCTTAATGCATTTGATAGTTATTACTTTAATTATGAAGAGTC 1990 ||||||||| |||||| | || | | | || ||||| || | | || | || || Sbjct 3727 AATTTGGAGCGCACGTAATATTGACTCGGTGGAGTTATATTATTTAACTGATAATGAATC 3786 Query 1991 TTTTAATGTAGTAACTGAGTTACTTACCTTTCAAA-TGGGT-------GAAA-ATCTTGT 2041 | || | | | | | | ||| | |||| ||||| |||| | |||| Sbjct 3787 TAGAGATATTATTAATAAACTGCTTGATTATCAATGTGGGTTAGCTAAGAAACAGTTTGT 3846 Query 2042 T-CAATTTTGTAGGAATCTTGTAGACACTTTGGAATGTAATATTCCAAAACGTAATTGCT 2100 | |||| | | |||| ||| | ||| |||||||| || ||||||||| Sbjct 3847 AACGGATTTG----ATTAATGTA-ACA----GACATG-AATATTCCCAAGTGTAATTGCT 3896 Query 2101 TTGTAGTTTGTAGTCCACCTAGTGCTGGGAAAAACTTTTTCTTTGATGGTGTTAAGGATT 2160 || || || ||| || || |||||||| || |||||| | | |||| | |||| |||| Sbjct 3897 TTCTAATTGTTAGCCCTCCAAGTGCTGGCAAGAACTTTCTATGCGATGCTATTAAAGATT 3956 Query 2161 ATTATTTGAATTCAGGACAGATGAACAATCCTAATAAATATAATCAATTTGCATATCAGG 2220 | ||| | ||| ||||| ||| | || ||||||||||||||| || || ||||||| Sbjct 3957 ACTATATTAATGTTGGACAAATGCAGAACCCTAATAAATATAATACCTTCGCGTATCAGG 4016 Query 2221 ATTGCCATAATAGAAGGATTATTATATGGAATGAACCTAATTATGAACCAAGGGAAATGG 2280 |||| || |||||| | || |||| ||||||||||| || || ||||| ||||||| || Sbjct 4017 ATTGTCACAATAGACGACTTCTTATTTGGAATGAACCAAACTACGAACCTAGGGAAACGG 4076 Query 2281 AGAACTTAAAAATGCTGTTTGCTGGTGATAATTTGTCTGCCAATGTAAAATGTAAGCCTC 2340 |||| || || ||| | |||| || ||||| |||||||| ||||| || ||||| |||| Sbjct 4077 AGAATTTGAAGATGTTATTTGGAGGGGATAACTTGTCTGCTAATGTTAAGTGTAAACCTC 4136 Query 2341 AGGCAAATGTAAAACGAACACCTGTTAT 2368 | || |||||||| || || || || || Sbjct 4137 AAGCTAATGTAAAGCGTACTCCAGTAAT 4164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16942858316000