Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_015586.1 Length=5819 Score E Sequences producing significant alignments: (Bits) Value seq1835 1995 0.0 seq1833 188 3e-44 >seq1835 Length=3957 Score = 1995 bits (2212), Expect = 0.0 Identities = 1297/1424 (91%), Gaps = 0/1424 (0%) Strand=Plus/Minus Query 1 ATGGTCGGTGATCGCGCGGTGCTGGCCGGGTCGGGACTCCCCTCGTCTAACAGGGGAGTC 60 |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 2312 ATGGCCGGTGATCGCACGGTGCTGGCCGGGTCGGGACTCCCCTCGTCTAACAGGGGAGTC 2253 Query 61 AGTGAATTCAGGAACCCCGAGGGAACCCTGACGGTCGGCATTGACTGGTTCTCCGCTTCC 120 ||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||| Sbjct 2252 AGTGAATTCAGGAACGCCGATGGAACCCTGACGGTCGGTATTGACTGGTTCTCCGCTTCC 2193 Query 121 ATCGATCTGCGCGCAGCGCTGGACGAGGTTGCGTTCCGTGATGGCGACAGTTTCGAAGAG 180 |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| Sbjct 2192 ATCGATCTGCGCGCAGCGCTGGACGAACTTGCGTTCCGTGATGGCGACAGCTTCGAAGAG 2133 Query 181 GTCCGCCAGTGGATCGAGTTCTCCCCGGACAATGCCCGCATTGCGGCCTTGCAGGTGTTC 240 ||||||||||||||||||||||||||||| || || || || |||||| ||||||||||| Sbjct 2132 GTCCGCCAGTGGATCGAGTTCTCCCCGGAGAACGCACGTATCGCGGCCCTGCAGGTGTTC 2073 Query 241 TGCTGGTTCTTCGCCGGTCTGGGTCTTGAACTGGATGAAACGGCCGGCGGCGGCCGCTTC 300 |||||||||||||| || || || ||||||||||||||||| ||||| || || |||||| Sbjct 2072 TGCTGGTTCTTCGCTGGGCTTGGCCTTGAACTGGATGAAACAGCCGGTGGTGGTCGCTTC 2013 Query 301 TACACGTGGCGAATCAAGATCATCGACGCGGCCAAGAAGTTCGTCGGGATGATCGAACTG 360 ||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||| Sbjct 2012 TACACGTGGCGTATCAAGATCATCGACGCGGCCAAGAAGTTCGTTGGCATGATCGAACTG 1953 Query 361 GGTGGCGAAAAGTGCCGCCGCGCAGATGGTACGTATACCGCCCGCATCGAGCTAACCGGT 420 || || || | ||||||||||| ||||| |||||||||||||||||||| || ||||| Sbjct 1952 GGCGGTGAGGAATGCCGCCGCGCGGATGGCACGTATACCGCCCGCATCGAACTGACCGGC 1893 Query 421 GATGGATGCAAGGCGATTAGCGCAGCGCGCTGCGGCCATGCGCAGCGGTGGCTGGAGCTT 480 |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct 1892 GATGGATGCAAGGCAATAGGCGCAGCGCGCTGCGGCCATGCGCAGCGGTGGCTGGAGCTT 1833 Query 481 CGAGCGAAGCTCGAAAGCTGCGCCGGGAGGATCACCCGTGTCGATGTGTGCGCCGATGAC 540 ||||||||||||||||||||||||| |||||||||||||| || || || ||||||||| Sbjct 1832 CGAGCGAAGCTCGAAAGCTGCGCCGCAAGGATCACCCGTGTTGACGTCTGTGCCGATGAC 1773 Query 541 CTGGTGGGCGATTACCCGTTGCGCATGGCACAGAAGTGGTACGCCAATGGCGACTTCGAC 600 |||||||||| ||||| |||||| | || ||||||||||||| | ||||| ||| || Sbjct 1772 TTGGTGGGCGAATACCCATTGCGCCTCGCGCAGAAGTGGTACGAGGAAGGCGAGTTCAAC 1713 Query 601 AACCGTGGTCAGCGCCCCAAGGCGCAGCTGGTGGACGACTACGACAGCGGCGACGGCAAG 660 || || |||||||||||||| || |||||||||||||||||||||||||| ||||||||| Sbjct 1712 AATCGCGGTCAGCGCCCCAAAGCACAGCTGGTGGACGACTACGACAGCGGTGACGGCAAG 1653 Query 661 ACGTTCTATGTGGGCGGCAAGAAGTCGGAGAAGCAACTGCGCGTCTACGAGAAGGGCAGG 720 ||||||||||| || |||||||||||||| ||||| |||||||||||||||||||||||| Sbjct 1652 ACGTTCTATGTCGGTGGCAAGAAGTCGGAAAAGCAGCTGCGCGTCTACGAGAAGGGCAGG 1593 Query 721 GAACAAGGCGACAAGAGTTCGCCGTGGGTGCGCTATGAGGCGCAGTTCCGCAACTCCAAT 780 || || ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1592 GAGCAGGGCGACAAGAGTTCGCCGTGGGTGCGCTATGAGGCGCAGTTCCGCAACTCCAAC 1533 Query 781 CGCAAGGAACTGCCGCTCGACATTCTGCGTGATCCGGCCTCCTACCTGCTCGGGGCTTAT 840 |||||||||||||||||||||||||||||||||||||| || |||||||| || |||||| Sbjct 1532 CGCAAGGAACTGCCGCTCGACATTCTGCGTGATCCGGCGTCTTACCTGCTGGGTGCTTAT 1473 Query 841 CCGGTCCTGTCCTTTCTGCGCTGTGTTGCTACGCGCATCGAAATCACGAAAGCCGCCGTT 900 || ||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 1472 CCAGTCCTGTCCTTTCTGCGGTGCGTTGCTACGCGCATCGAAATCACGAAAGCCGCCGTT 1413 Query 901 GAGGCGACGTGGAAGAGCGTCCGTCGCCACATCCGCCGCCAGTACGGCGCGGCCCTCAAT 960 || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1412 GAAGCGACGTGGAAGAGCGTTCGTCGCCACATCCGCCGCCAGTACGGCGCGGCCCTCAAT 1353 Query 961 TTCATCGCCAAGAACTGCCCAGACGATCAGGCATTGCGGGCGGTAATCGAATCCTGCACT 1020 ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct 1352 TTCATCGCCAAGAACTGTCCTGACGATCAGGCATTGCGGGCGGTAATCGAATCCTGCACT 1293 Query 1021 TCGCCATCGCTGCCGAAGTGGGTCACAGGTGACACAGCAGCGCACTGGCCCGAAATCGCG 1080 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1292 TCGCCATCGCTGCCGAAGTGGGTCACAGGTGACACAGCAGCGCACTGGCCCGAAATCGCG 1233 Query 1081 GCCGTACAGCCAACCTCAAAGGGGTAACAACACATGAGCATCAAGGTCACCGTCCTCAAG 1140 ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| Sbjct 1232 GCCGTACAGCCAACCTCAAAGGGGTAACAGCACATGAGCATCAAGATCACCGTCCTCAAG 1173 Query 1141 AACGAAATTGACGAACGCGGCGGCAGCTTCAAGAACGACGCTGGCGAGAACGTGGAATAC 1200 | |||||| || ||||||| ||||||||||||||| ||| ||||| |||| | | | Sbjct 1172 AGCGAAATCGATGAACGCGTCGGCAGCTTCAAGAATGACAAGGGCGAAGACGTCAAGTTC 1113 Query 1201 ACCACCCGCAAGCAGAAGGCCAAGCTGGAAACCGGTGGTTTTGCCTACCCGTTCGACGTG 1260 ||||| |||||||||||||||||||||||||||| || || ||||| || || |||||| Sbjct 1112 ACCACTCGCAAGCAGAAGGCCAAGCTGGAAACCGCAGGCTTCGCCTATCCATTTGACGTG 1053 Query 1261 CGCCTGGACAAGGGTCAGCCGGGCTACCCCGAGGGCGAGTACGAGCTCGATGTTGAATCC 1320 |||||||| | |||||| ||||||||||| ||||||||||||||||||||||| ||| Sbjct 1052 CGCCTGGAGGATGGTCAGAGCGGCTACCCCGAAGGCGAGTACGAGCTCGATGTTGATTCC 993 Query 1321 ATGTTGCAGGTCAACAAGGGCGTTGCCTCGCTGAGCAAGTTCACCGTGCTGCGCCCGCTG 1380 ||||||||||||||||||||||| ||||||||||||||||||||||| |||||| | || Sbjct 992 ATGTTGCAGGTCAACAAGGGCGTCGCCTCGCTGAGCAAGTTCACCGTTCTGCGCATGGTG 933 Query 1381 CAGAAGGCTGCGCCACGCCCGGCAGCGCAGGCCTGAGTCATGGC 1424 | ||| | || || ||| | || || ||||||| ||||||||| Sbjct 932 CCCAAGCCCGCACCCCGCGCAGCCGCTCAGGCCTAAGTCATGGC 889 Score = 650 bits (720), Expect = 0.0 Identities = 730/973 (75%), Gaps = 74/973 (8%) Strand=Plus/Minus Query 4914 GAACATAATATACATACCGCCGTTCTCGGCGCCGCTAACCGCCTGAATTTGGGCGGTTTT 4973 |||||||||||||||||| ||||| ||||| |||||||||||||||| ||||||||||| Sbjct 3278 GAACATAATATACATACCACCGTTGTCGGCAGCGCTAACCGCCTGAATCTGGGCGGTTTT 3219 Query 4974 TGCGTTTGCGAGGCCCGGCATCGACAGCGCTACCAGCGCGACGACCGCAGCCGCCGCGCC 5033 |||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||| Sbjct 3218 TGCGTTTGCGAGACCGGGCATCGACAGCGCTACTAGCGCGACGACCGCAGCCGCCGCGCT 3159 Query 5034 CATTCGGTCCAGCATCAACCGCCAGAGCGCACGTTCGGTTGCCGTCGTTGCGCGCTCTGC 5093 ||||| ||||||||| | ||||| || || ||||||||||| | ||| |||||||| || Sbjct 3158 CATTCTGTCCAGCATGAGGCGCCATAGGGCCCGTTCGGTTGCAGACGTGGCGCGCTCGGC 3099 Query 5094 ATGAATCATGGCGATCCAAGTCGGGCCATCGAGCTTCGCCAGCGCGCAAATTTGCGCAAT 5153 ||| |||||||||||||| || |||||||| |||||||||||||||||||| |||||||| Sbjct 3098 ATGGATCATGGCGATCCACGTGGGGCCATCCAGCTTCGCCAGCGCGCAAATCTGCGCAAT 3039 Query 5154 TCGTTCATCTGAGAGCGGCTTCTCGCCC--GCGCGAGCCTTCGACAGCAGCTGCCTCTGA 5211 ||| ||||| | |||||| | |||||| ||| ||| || | |||| || | Sbjct 3038 TCGCTCATCGGCCAGCGGCGTGTCGCCCTTCCGCCAGC--GAGATACCAGCGACCGGGTA 2981 Query 5212 ATTCCCAGTCGAGCCGCCAAAGCGTTGTCTGA--CGGGATTCCCGTGCGTTCGCGGGCGG 5269 | ||| | | |||||||| | || || || ||||| | | || | || Sbjct 2980 ACAGTCAGCCTTTCAGCCAAAGCCATATCGGACGCGAGATTCAAGCGACTTTTC--ACGT 2923 Query 5270 CATCGAGCAGTTCACCTACGGCGGTCATG--GTTTCCTCTTG--------GTTGACAACG 5319 || || ||||| |||||||||||| | ||| ||| |||||| ||| Sbjct 2922 TGTCAAGTAGTTCGTTGACGGCGGTCATGGCGGCTCCAGTTGATCGATCAGTTGAC-ACG 2864 Query 5320 TGTGGTCCTTTTAGATTACATGCTCCGCGTGGTCCAGAT-GGACCGCACCCGCCAACGGC 5378 ||| || | || |||||||| || ||| | ||| | ||||||||| |||| Sbjct 2863 TGTTTCCCGATCAGTTTACATGCGCCTCGTTG-AGTGATCACTCAACACCCGCCACCGGC 2805 Query 5379 ACCCCAAGGCCGCTGGCGGGTTTCCTTGGGGCTTGGGGTAGGGGAACAGGGATGATCGAT 5438 |||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||| Sbjct 2804 ACCCCAAGGCCGCTGGCGGGTTCTCTTGGGGCTTGGGGCAGGGGAGCAGGGATGATCGAT 2745 Query 5439 CCGCTCATTACCTTCGCGCTGCTGGCCGCCATCGTGGCCGTGTCCATTGGCGGCGCTCGC 5498 ||| ||||| |||||| ||||||||| |||||||||||||| ||||||||| |||| Sbjct 2744 CCGTTCATTGCCTTCGTGCTGCTGGCGGCCATCGTGGCCGTATCCATTGGCAGCGCCAAA 2685 Query 5499 ATCGTTTCGTGGTTGCTCGACCGGCGT---GAGTACAC----CGCCGCGCA---GCAGCT 5548 |||||||||||| |||||||||||| |||| | | ||| ||||| | ||| Sbjct 2684 CTCGTTTCGTGGTGCCTCGACCGGCGTGGGGAGTCCGCCCGTCGCAGCGCACACGAAGCG 2625 Query 5549 GC--GCGAAGCCCAGG---TCATCGCACTCGC---------------------------- 5575 || || |||||||| | || ||| || Sbjct 2624 GCCTTCGTAGCCCAGGCACGCGCCGAACTGGCCGCAACCGGCTGGACCCCGGATCACGAA 2565 Query 5576 --------GCGGGCCGAGATTGCGGCCACGAAGCGCGGTGATCTGCTCGCTGCCGCTGAG 5627 | |||||| || |||||||| ||||||||||||||||| | |||||| | Sbjct 2564 ACGCCCTATCAGGCCGAAATCGCGGCCACCAAGCGCGGTGATCTGCTGACCGCCGCT-CG 2506 Query 5628 CT-GGCCGAAGCCCAGGAGCGAGTCGCATGAGCATCCATACCTTTGCCGCCGAACTTGCG 5686 || || |||| |||||||| | |||||||||| | ||| |||||| || ||| Sbjct 2505 CTACGCAGAAGAGCAGGAGCGCGCCGCATGAGCAGGTTTCCCTCATTCGCCGAGCTGGCG 2446 Query 5687 GAGGCCGATATGGGCCTTTTCGCATGCGCTGCGCTGATTGTCGCTTGCCTCGGCAGCGCA 5746 ||| ||||||||||||||||||||||| ||||||||||||| |||||||| |||| Sbjct 2445 GAGTTAGATATGGGCCTTTTCGCATGCGCGGCGCTGATTGTCGTCAGCCTCGGCGCCGCA 2386 Query 5747 ATAGCTTCAATCGTGATTGAGCAGTCATGGCTTGCGATCCGTCGCCTGTGGAAGCTCTGG 5806 || ||||||||||||||||||| | ||||||||||| | || |||||||||||||| ||| Sbjct 2385 ATGGCTTCAATCGTGATTGAGCGGGCATGGCTTGCGCTTCGCCGCCTGTGGAAGCTTTGG 2326 Query 5807 AAGGGCCGCGCCA 5819 ||||||||| ||| Sbjct 2325 AAGGGCCGCACCA 2313 >seq1833 Length=3524 Score = 188 bits (208), Expect = 3e-44 Identities = 279/391 (71%), Gaps = 36/391 (9%) Strand=Plus/Plus Query 4469 CCGGGGTGTAGGGGCAGCGCCCCTACGGAAGCGCTTCACACGCGCTGGCGAGGTATCGGC 4528 |||||||||||||||||||||||||||||| ||||||||||||||| ||| | | ||| Sbjct 2330 CCGGGGTGTAGGGGCAGCGCCCCTACGGAAACGCTTCACACGCGCTCGCGGCGCTTTGGC 2389 Query 4529 CCCGGTACCGGTAGGACTGCTGCCGGCGGTTCGGCGTCGGGGCCAGCCATCGCCCCCGAT 4588 |||||| |||||||| ||||||| | || ||||||||||| |||||||||||| ||| Sbjct 2390 CCCGGTTCCGGTAGGTCTGCTGCGGCTGGCTCGGCGTCGGGTCCAGCCATCGCCACCGCC 2449 Query 4589 GACCGCCTTTCTCGGCGATG--TGCCAAGGCATCGGAGAGGTTCACCACGCTGGC----- 4641 || ||| | | ||| || | ||| |||| || || || || |||| Sbjct 2450 GAACGC---TGTTTGCGTTGGCTTACAA--CATCCCGCAGATTGACGACAGTGGCAGGAC 2504 Query 4642 ---GGCG-TTGAAGGACAAGGGTTTCCGT---------GTTTTGCCGTTTG-CGCGGCCG 4687 |||| || || | | || ||| | || || | | || |||| Sbjct 2505 GCTGGCGAATGCCGGCGTCGCGATTGCGTACATTCTTGGAACTGTCGATCGACGGCGCCG 2564 Query 4688 CTC--------TCCATCATCCGCCGCCATTCCTGCGCCTGCGCA-GCAGTGAGCGACAGC 4738 | | ||||||||||| |||||||||||||| || ||| || |||||||||||| Sbjct 2565 CACGGGCAGCTTCCATCATCCGGCGCCATTCCTGCGCTTG-GCAGGCGGTGAGCGACAGC 2623 Query 4739 CAGGCCAGATCTTCGGGCAGCAACTCGCGGCCTTCGGGTGTGACCAGTCGGCCAGCCTTA 4798 ||||||||||| | ||| || |||||| || || || |||| ||| || || | Sbjct 2624 CAGGCCAGATCCTGCGGCTCCAGCTCGCGACCCTCAGGAGTGATCAGGCGATCACCGAGG 2683 Query 4799 AACGAAAAACCGGCCCAAGGGCCGGTTAGGT 4829 || ||||||||||||||||||||||| |||| Sbjct 2684 AAAGAAAAACCGGCCCAAGGGCCGGTCAGGT 2714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 18506343188160