Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= NC_005040.1 Length=5499 Score E Sequences producing significant alignments: (Bits) Value seq926 224 3e-55 seq3793 201 4e-48 seq3406 129 2e-26 seq914 113 2e-21 >seq926 Length=9957 Score = 224 bits (248), Expect = 3e-55 Identities = 269/363 (74%), Gaps = 8/363 (2%) Strand=Plus/Plus Query 2103 TTAACAATAGCAAAAGAATTACTCAACTATCAATTTGGC---GATGACCCTGAAGTAGTA 2159 |||| ||||| || |||||| | ||||||||| | ||| | | || ||| Sbjct 6662 TTAATCATAGCTAACGAATTATTATTGTATCAATTTAACAACGATAAAACAGATGTA--- 6718 Query 2160 ATTGAATTTTTAACAACA-CTATATAATGTCATAGACAAAAGAGTTCCGAAATTAAATAG 2218 || ||||||| |||| || |||||||| | ||||||| | ||||||| | ||| Sbjct 6719 -TTTAATTTTTTACAATTGCTTTATAATGTTGTTGACAAAAAAAATCCGAAACTCAATTC 6777 Query 2219 TATATGTATAAAAAGTCCCCCTTCGGCAGGTAAGAACttttttttCGATGCCGTTGCATC 2278 |||||| || | ||||| ||||| || ||||| || | |||||| || || || || || Sbjct 6778 TATATGCATTCATAGTCCTCCTTCCGCTGGTAAAAATTATTTTTTTGACGCAGTGGCGTC 6837 Query 2279 GTATTTGCTTTCATATGGTATGTTCGGTACAGCCAATAAAAACAATAATTTTTCGTGGGC 2338 ||||| || || ||||||||||| || || || ||||| ||||||||| ||||| Sbjct 6838 ATATTTCATTAATTACGGTATGTTCGGCACTGCTAACAAAAATAATAATTTTAATTGGGC 6897 Query 2339 AGACGGAGCGGGTAAACGATTAGTTCTATGGAACGAACCAAACTATGAACAATACCATAT 2398 ||||| ||||||||| || | || | |||||||||||||| || |||||| | ||| | Sbjct 6898 TGACGGCGCGGGTAAAAGAATCGTAATTTGGAACGAACCAAATTACGAACAACATCATTT 6957 Query 2399 AGAAAAAATAAAAGAACTTTTGGGGGGAGATACAACAAGAATACATGTAAAATATGCAAA 2458 |||||||| |||||| | ||||||| ||||| || ||| ||||||| |||||| ||| Sbjct 6958 GGAAAAAATGAAAGAATTACTGGGGGGTGATACTACGAGAGTACATGTTAAATATAAAAA 7017 Query 2459 CGA 2461 ||| Sbjct 7018 CGA 7020 Score = 93.3 bits (102), Expect = 1e-15 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 3346 TCCCATGTGCATTCTACATCAGTAAAATTTACAGGGACTATACTATTAGTGGCAGTAGTT 3405 ||||| || ||||||||||||||| ||| | ||| | || ||||||||||| ||| || Sbjct 7613 TCCCACGTACATTCTACATCAGTATAATCTTGAGGTATTACACTATTAGTGGTAGTCGTC 7672 Query 3406 AACTTATGCACTGGATATATTCCTACATGTACACTAGGTTGTACTTTAT 3454 | || || || |||||||| |||| ||||| ||||||||| | | ||| Sbjct 7673 ATTTTGTGAACCGGATATATACCTATATGTATACTAGGTTGCATTGTAT 7721 >seq3793 Length=108655 Score = 201 bits (222), Expect = 4e-48 Identities = 287/401 (72%), Gaps = 10/401 (2%) Strand=Plus/Minus Query 2108 AATAGCAAAAGAATTACTCAACTATCAATTTGGCGATGACCCTGAAGTAGTAATTGAAT- 2166 |||||| || ||||| | ||||||||| | ||||| ||| | |||| ||| Sbjct 12977 AATAGCGAATAAATTATTATTTTATCAATTTAACAATGAC---GAAAACGAAATTAAATC 12921 Query 2167 --TTTTAACAACACTATATAATGTCATAGACAAAAGAGTTCCGAAATTAAATAGTATATG 2224 |||||||| ||| |||||| | || || |||| | |||| ||||||||| | || Sbjct 12920 ATTTTTAACAGTACTTTATAATATAATCGATAAAAAAATTCCAAAATTAAATTCATTGTG 12861 Query 2225 TATAAAAAGTCCCCCTTCGGCAGGTAAGAACttttttttCGATGCCGTTGCATCGTATTT 2284 ||| | || || || || ||||| ||||||||||| ||||| || || || | ||| Sbjct 12860 CATATATAGCGAACCGTCAGCGGGTAAAAACTTTTTTTTTGATGCAGTAGCTTCTTTTTT 12801 Query 2285 GCTTTCA--TATGGTATGTTCGGTACAGCCAATAAAAACAATAATTTTTCGTGGGCAGAC 2342 || | ||||||||||||||||| || |||||||| ||||||||| | ||||| ||| Sbjct 12800 --TTAAAATTATGGTATGTTCGGTACCGCGAATAAAAATAATAATTTTACATGGGCTGAC 12743 Query 2343 GGAGCGGGTAAACGATTAGTTCTATGGAACGAACCAAACTATGAACAATACCATATAGAA 2402 || || || ||| || | ||| | ||||| ||||| || || ||| | ||||| ||| Sbjct 12742 GGTGCAGGAAAAAGAATTGTTATTTGGAATGAACCTAATTACGAAACTCATCATATTGAA 12683 Query 2403 AAAATAAAAGAACTTTTGGGGGGAGATACAACAAGAATACATGTAAAATATGCAAACGAC 2462 ||||| |||||| | ||||| || |||||||| | | || ||||||||| ||| || Sbjct 12682 AAAATGAAAGAATTATTGGGTGGTGATACAACTCGTGTGCACGTAAAATATAAAAATGAT 12623 Query 2463 GTTAGTGTGCAAAGGGTACCCATTATTATATTAACAAATAA 2503 | ||| | ||| || ||| ||||||||||||| Sbjct 12622 CAACCGCTTCAAGGCCCACCTATCATTTTATTAACAAATAA 12582 Score = 201 bits (222), Expect = 4e-48 Identities = 287/401 (72%), Gaps = 10/401 (2%) Strand=Plus/Plus Query 2108 AATAGCAAAAGAATTACTCAACTATCAATTTGGCGATGACCCTGAAGTAGTAATTGAAT- 2166 |||||| || ||||| | ||||||||| | ||||| ||| | |||| ||| Sbjct 16248 AATAGCGAATAAATTATTATTTTATCAATTTAACAATGAC---GAAAACGAAATTAAATC 16304 Query 2167 --TTTTAACAACACTATATAATGTCATAGACAAAAGAGTTCCGAAATTAAATAGTATATG 2224 |||||||| ||| |||||| | || || |||| | |||| ||||||||| | || Sbjct 16305 ATTTTTAACAGTACTTTATAATATAATCGATAAAAAAATTCCAAAATTAAATTCATTGTG 16364 Query 2225 TATAAAAAGTCCCCCTTCGGCAGGTAAGAACttttttttCGATGCCGTTGCATCGTATTT 2284 ||| | || || || || ||||| ||||||||||| ||||| || || || | ||| Sbjct 16365 CATATATAGCGAACCGTCAGCGGGTAAAAACTTTTTTTTTGATGCAGTAGCTTCTTTTTT 16424 Query 2285 GCTTTCA--TATGGTATGTTCGGTACAGCCAATAAAAACAATAATTTTTCGTGGGCAGAC 2342 || | ||||||||||||||||| || |||||||| ||||||||| | ||||| ||| Sbjct 16425 --TTAAAATTATGGTATGTTCGGTACCGCGAATAAAAATAATAATTTTACATGGGCTGAC 16482 Query 2343 GGAGCGGGTAAACGATTAGTTCTATGGAACGAACCAAACTATGAACAATACCATATAGAA 2402 || || || ||| || | ||| | ||||| ||||| || || ||| | ||||| ||| Sbjct 16483 GGTGCAGGAAAAAGAATTGTTATTTGGAATGAACCTAATTACGAAACTCATCATATTGAA 16542 Query 2403 AAAATAAAAGAACTTTTGGGGGGAGATACAACAAGAATACATGTAAAATATGCAAACGAC 2462 ||||| |||||| | ||||| || |||||||| | | || ||||||||| ||| || Sbjct 16543 AAAATGAAAGAATTATTGGGTGGTGATACAACTCGTGTGCACGTAAAATATAAAAATGAT 16602 Query 2463 GTTAGTGTGCAAAGGGTACCCATTATTATATTAACAAATAA 2503 | ||| | ||| || ||| ||||||||||||| Sbjct 16603 CAACCGCTTCAAGGCCCACCTATCATTTTATTAACAAATAA 16643 >seq3406 Length=246248 Score = 129 bits (142), Expect = 2e-26 Identities = 85/98 (87%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 1679 AAGTGTTTCGCAGGATGACCAAGATGGAGTACAAGATAACGGATCCACAAATGTTTTTCA 1738 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 43300 AATTGTTTCGCAGGATGACCAAGATGGAGTACAAGATAACGGATCCACAAATGTTTTTCA 43241 Query 1739 AGNNNNNNNNNNNNGCAGCCAAGAGGGCCCGCGGCAAA 1776 || |||||||||||||||||||||||| Sbjct 43240 AGAAGAAGAAGAAGGCAGCCAAGAGGGCCCGCGGCAAA 43203 >seq914 Length=10113 Score = 113 bits (124), Expect = 2e-21 Identities = 191/275 (69%), Gaps = 4/275 (1%) Strand=Plus/Minus Query 2193 GACAAAAGAGTTCCGAAATTAAATAGTATATGTATAAAAAGTCCCCCTTCGGCAGGTAAG 2252 || |||| | |||||||| |||||| || ||| | ||| || || || || Sbjct 605 GATAAAAAAATTCCGAAAAGAAATAGCATGCTAATACATTCTCCTCCCAGCGCGGGCAAA 546 Query 2253 AACttttttttCGATGCCGTTGCATCGTATTTGCTTTCA--TATGGTATGTTCGGTACAG 2310 || | ||||||||||||||| || | | ||| ||| | || ||||||||||| || | Sbjct 545 AATTATTTTTTCGATGCCGTAGCCGCCTTTTT--TTTGAATTACGGTATGTTCGGAACTG 488 Query 2311 CCAATAAAAACAATAATTTTTCGTGGGCAGACGGAGCGGGTAAACGATTAGTTCTATGGA 2370 |||| |||| |||||||| | | || || || || ||||| | || | |||| Sbjct 487 CCAACAAAACGAATAATTTCAGTTTTTCCGATGGCGCCGGCAAACGTCTCGTAATTTGGA 428 Query 2371 ACGAACCAAACTATGAACAATACCATATAGAAAAAATAAAAGAACTTTTGGGGGGAGATA 2430 ||||||| || || | || ||| | |||||||| || ||||| || || || |||| Sbjct 427 ACGAACCTAATTACTAGGTGTATCATTTGGAAAAAATGAAGGAACTATTAGGAGGGGATA 368 Query 2431 CAACAAGAATACATGTAAAATATGCAAACGACGTT 2465 | || ||| | ||||| ||||| |||||| ||| Sbjct 367 CCACTAGAGTGCATGTTAAATACAAAAACGATGTT 333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17484031215200